Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lrif1Q8CDD9 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Lrif1Q8CDD9 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lrif1Q8CDD9 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lrif1Q8CDD9 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Lrif1Q8CDD9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lrif1Q8CDD9 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lrif1Q8CDD9 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lrif1Q8CDD9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Gm13241-201ENSMUST00000094493 780 ntBASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lrif1Q8CDD9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.14■□□□□ 0.66
Lrif1Q8CDD9 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Lrif1Q8CDD9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lrif1Q8CDD9 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Gm15039-201ENSMUST00000118914 875 ntBASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.13■□□□□ 0.65
Lrif1Q8CDD9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lrif1Q8CDD9 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms