Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps28Q9D1C8 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Vps28Q9D1C8 Gm43060-201ENSMUST00000200621 289 ntBASIC20.02■□□□□ 0.8
Vps28Q9D1C8 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps28Q9D1C8 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps28Q9D1C8 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.02■□□□□ 0.79
Vps28Q9D1C8 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Vps28Q9D1C8 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Gm11421-201ENSMUST00000122124 294 ntBASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps28Q9D1C8 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps28Q9D1C8 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps28Q9D1C8 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps28Q9D1C8 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Vps28Q9D1C8 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Vps28Q9D1C8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps28Q9D1C8 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20■□□□□ 0.79
Vps28Q9D1C8 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps28Q9D1C8 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps28Q9D1C8 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20■□□□□ 0.79
Vps28Q9D1C8 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps28Q9D1C8 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps28Q9D1C8 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Vps28Q9D1C8 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Vps28Q9D1C8 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Iqck-206ENSMUST00000208658 2891 ntBASIC19.95■□□□□ 0.78
Vps28Q9D1C8 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.94■□□□□ 0.78
Vps28Q9D1C8 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms