Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Clp1Q99LI9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clp1Q99LI9 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clp1Q99LI9 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Clp1Q99LI9 Gm13168-201ENSMUST00000121771 632 ntBASIC20.77■□□□□ 0.92
Clp1Q99LI9 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Clp1Q99LI9 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.77■□□□□ 0.92
Clp1Q99LI9 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clp1Q99LI9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Clp1Q99LI9 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clp1Q99LI9 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clp1Q99LI9 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Clp1Q99LI9 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clp1Q99LI9 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clp1Q99LI9 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.76■□□□□ 0.91
Clp1Q99LI9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Clp1Q99LI9 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Clp1Q99LI9 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
Clp1Q99LI9 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Clp1Q99LI9 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clp1Q99LI9 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clp1Q99LI9 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clp1Q99LI9 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clp1Q99LI9 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clp1Q99LI9 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.74■□□□□ 0.91
Clp1Q99LI9 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.74■□□□□ 0.91
Clp1Q99LI9 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.74■□□□□ 0.91
Clp1Q99LI9 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
Clp1Q99LI9 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Clp1Q99LI9 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Clp1Q99LI9 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clp1Q99LI9 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.73■□□□□ 0.91
Clp1Q99LI9 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.73■□□□□ 0.91
Clp1Q99LI9 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.73■□□□□ 0.91
Clp1Q99LI9 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.73■□□□□ 0.91
Clp1Q99LI9 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clp1Q99LI9 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clp1Q99LI9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clp1Q99LI9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Gm37856-201ENSMUST00000191634 999 ntBASIC20.72■□□□□ 0.91
Clp1Q99LI9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clp1Q99LI9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clp1Q99LI9 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Clp1Q99LI9 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clp1Q99LI9 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms