Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trbv1A0A0B4J1G7 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
Trbv1A0A0B4J1G7 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm5522-201ENSMUST00000189483 1242 ntBASIC15.27■□□□□ 0.04
Trbv1A0A0B4J1G7 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC15.27■□□□□ 0.04
Trbv1A0A0B4J1G7 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trbv1A0A0B4J1G7 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trbv1A0A0B4J1G7 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trbv1A0A0B4J1G7 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Trbv1A0A0B4J1G7 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC15.27■□□□□ 0.03
Trbv1A0A0B4J1G7 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trbv1A0A0B4J1G7 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trbv1A0A0B4J1G7 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Rarb-207ENSMUST00000225921 2756 ntBASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm15546-201ENSMUST00000122095 826 ntBASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm15820-201ENSMUST00000201566 728 ntBASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trbv1A0A0B4J1G7 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm42501-201ENSMUST00000200220 1026 ntBASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm43909-201ENSMUST00000203443 1876 ntBASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trbv1A0A0B4J1G7 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv1A0A0B4J1G7 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Fam105a-203ENSMUST00000226170 3043 ntBASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Trbv1A0A0B4J1G7 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm10620-201ENSMUST00000098379 1332 ntBASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Trbv1A0A0B4J1G7 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms