Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC15.33■□□□□ 0.04
Trbv1A0A0B4J1G7 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm10399-202ENSMUST00000202768 748 ntBASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm18755-201ENSMUST00000218030 1099 ntBASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv1A0A0B4J1G7 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm43231-201ENSMUST00000202960 2258 ntBASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv1A0A0B4J1G7 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm5812-201ENSMUST00000061073 957 ntBASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Dapk1-207ENSMUST00000226059 5009 ntBASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv1A0A0B4J1G7 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv1A0A0B4J1G7 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Gm42900-201ENSMUST00000197184 2167 ntBASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trbv1A0A0B4J1G7 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms