Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Gm13534-201ENSMUST00000121169 513 ntBASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Col4a4Q9QZR9 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a4Q9QZR9 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a4Q9QZR9 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a4Q9QZR9 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.28■□□□□ 0.84
Col4a4Q9QZR9 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a4Q9QZR9 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a4Q9QZR9 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a4Q9QZR9 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a4Q9QZR9 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a4Q9QZR9 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.27■□□□□ 0.84
Col4a4Q9QZR9 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a4Q9QZR9 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a4Q9QZR9 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a4Q9QZR9 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col4a4Q9QZR9 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Col4a4Q9QZR9 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a4Q9QZR9 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.24■□□□□ 0.83
Col4a4Q9QZR9 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col4a4Q9QZR9 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col4a4Q9QZR9 Rab3c-203ENSMUST00000224180 967 ntBASIC20.24■□□□□ 0.83
Col4a4Q9QZR9 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col4a4Q9QZR9 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col4a4Q9QZR9 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.24■□□□□ 0.83
Col4a4Q9QZR9 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a4Q9QZR9 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col4a4Q9QZR9 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col4a4Q9QZR9 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a4Q9QZR9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Col4a4Q9QZR9 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a4Q9QZR9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col4a4Q9QZR9 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col4a4Q9QZR9 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col4a4Q9QZR9 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Col4a4Q9QZR9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.22■□□□□ 0.83
Col4a4Q9QZR9 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col4a4Q9QZR9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col4a4Q9QZR9 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col4a4Q9QZR9 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col4a4Q9QZR9 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col4a4Q9QZR9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.2■□□□□ 0.82
Col4a4Q9QZR9 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col4a4Q9QZR9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Col4a4Q9QZR9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col4a4Q9QZR9 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col4a4Q9QZR9 Gm715-201ENSMUST00000117865 831 ntBASIC20.19■□□□□ 0.82
Col4a4Q9QZR9 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col4a4Q9QZR9 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Col4a4Q9QZR9 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col4a4Q9QZR9 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col4a4Q9QZR9 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.18■□□□□ 0.82
Col4a4Q9QZR9 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col4a4Q9QZR9 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col4a4Q9QZR9 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col4a4Q9QZR9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col4a4Q9QZR9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms