Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Sh3rf1Q69ZI1 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Sh3rf1Q69ZI1 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC19.95■□□□□ 0.78
Sh3rf1Q69ZI1 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.95■□□□□ 0.78
Sh3rf1Q69ZI1 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.95■□□□□ 0.78
Sh3rf1Q69ZI1 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Sh3rf1Q69ZI1 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Gm45417-201ENSMUST00000209533 758 ntBASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Sh3rf1Q69ZI1 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sh3rf1Q69ZI1 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.92■□□□□ 0.78
Sh3rf1Q69ZI1 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Sh3rf1Q69ZI1 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sh3rf1Q69ZI1 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Sh3rf1Q69ZI1 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Sh3rf1Q69ZI1 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Sh3rf1Q69ZI1 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.89■□□□□ 0.77
Sh3rf1Q69ZI1 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sh3rf1Q69ZI1 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sh3rf1Q69ZI1 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms