Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vps28Q9D1C8 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps28Q9D1C8 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps28Q9D1C8 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps28Q9D1C8 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vps28Q9D1C8 Spcs1-204ENSMUST00000226782 949 ntBASIC20.28■□□□□ 0.84
Vps28Q9D1C8 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.28■□□□□ 0.84
Vps28Q9D1C8 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.27■□□□□ 0.84
Vps28Q9D1C8 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Vps28Q9D1C8 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Vps28Q9D1C8 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Vps28Q9D1C8 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
Vps28Q9D1C8 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.27■□□□□ 0.83
Vps28Q9D1C8 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Gm43017-201ENSMUST00000198296 752 ntBASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Vps28Q9D1C8 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Vps28Q9D1C8 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Vps28Q9D1C8 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
Vps28Q9D1C8 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
Vps28Q9D1C8 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps28Q9D1C8 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps28Q9D1C8 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Vps28Q9D1C8 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Vps28Q9D1C8 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Gm43173-201ENSMUST00000202246 593 ntBASIC20.23■□□□□ 0.83
Vps28Q9D1C8 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps28Q9D1C8 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps28Q9D1C8 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps28Q9D1C8 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps28Q9D1C8 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps28Q9D1C8 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps28Q9D1C8 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Vps28Q9D1C8 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Vps28Q9D1C8 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps28Q9D1C8 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.21■□□□□ 0.83
Vps28Q9D1C8 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms