Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cdk5rap3Q99LM2 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cdk5rap3Q99LM2 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
Cdk5rap3Q99LM2 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cdk5rap3Q99LM2 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cdk5rap3Q99LM2 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdk5rap3Q99LM2 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Mir6236-201ENSMUST00000184437 123 ntBASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
Cdk5rap3Q99LM2 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdk5rap3Q99LM2 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Gm43530-201ENSMUST00000195920 274 ntBASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Gm9870-201ENSMUST00000063874 645 ntBASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cdk5rap3Q99LM2 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Cdk5rap3Q99LM2 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdk5rap3Q99LM2 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Cdk5rap3Q99LM2 Gm15820-201ENSMUST00000201566 728 ntBASIC20.47■□□□□ 0.87
Cdk5rap3Q99LM2 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cdk5rap3Q99LM2 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.46■□□□□ 0.87
Cdk5rap3Q99LM2 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk5rap3Q99LM2 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk5rap3Q99LM2 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.45■□□□□ 0.86
Cdk5rap3Q99LM2 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk5rap3Q99LM2 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Cdk5rap3Q99LM2 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cdk5rap3Q99LM2 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdk5rap3Q99LM2 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Cdk5rap3Q99LM2 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.43■□□□□ 0.86
Cdk5rap3Q99LM2 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms