Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 AV356131-201ENSMUST00000206201 750 ntBASIC18.28■□□□□ 0.52
Pif1Q80SX8 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pif1Q80SX8 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pif1Q80SX8 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Pif1Q80SX8 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Pif1Q80SX8 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.27■□□□□ 0.52
Pif1Q80SX8 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC18.27■□□□□ 0.52
Pif1Q80SX8 Gm10033-202ENSMUST00000211874 928 ntBASIC18.27■□□□□ 0.52
Pif1Q80SX8 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.27■□□□□ 0.51
Pif1Q80SX8 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Pif1Q80SX8 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Pif1Q80SX8 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Pif1Q80SX8 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Pif1Q80SX8 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Pif1Q80SX8 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.25■□□□□ 0.51
Pif1Q80SX8 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Pif1Q80SX8 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Pif1Q80SX8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Pif1Q80SX8 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Pif1Q80SX8 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Pif1Q80SX8 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Pif1Q80SX8 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Pif1Q80SX8 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pif1Q80SX8 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pif1Q80SX8 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.23■□□□□ 0.51
Pif1Q80SX8 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.23■□□□□ 0.51
Pif1Q80SX8 Mir6236-201ENSMUST00000184437 123 ntBASIC18.23■□□□□ 0.51
Pif1Q80SX8 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Pif1Q80SX8 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Pif1Q80SX8 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Pif1Q80SX8 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.22■□□□□ 0.51
Pif1Q80SX8 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.22■□□□□ 0.51
Pif1Q80SX8 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Pif1Q80SX8 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.21■□□□□ 0.51
Pif1Q80SX8 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pif1Q80SX8 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pif1Q80SX8 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pif1Q80SX8 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Pif1Q80SX8 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pif1Q80SX8 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Pif1Q80SX8 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms