Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf1Q69ZI1 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.03■□□□□ 0.8
Sh3rf1Q69ZI1 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf1Q69ZI1 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf1Q69ZI1 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf1Q69ZI1 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf1Q69ZI1 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf1Q69ZI1 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf1Q69ZI1 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf1Q69ZI1 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf1Q69ZI1 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf1Q69ZI1 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf1Q69ZI1 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf1Q69ZI1 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf1Q69ZI1 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf1Q69ZI1 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Golgb1-201ENSMUST00000023534 498 ntBASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf1Q69ZI1 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Gm12821-201ENSMUST00000120022 600 ntBASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Sh3rf1Q69ZI1 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Sh3rf1Q69ZI1 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.96■□□□□ 0.79
Sh3rf1Q69ZI1 Gm27454-201ENSMUST00000185090 204 ntBASIC19.96■□□□□ 0.79
Sh3rf1Q69ZI1 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC19.96■□□□□ 0.79
Sh3rf1Q69ZI1 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Sh3rf1Q69ZI1 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Sh3rf1Q69ZI1 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 107.9 ms