Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Gm10420-201ENSMUST00000121713 882 ntBASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.22■□□□□ 0.51
Shisa8J3QNX5 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Shisa8J3QNX5 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shisa8J3QNX5 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Gm12366-201ENSMUST00000121722 873 ntBASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Gm5786-201ENSMUST00000085368 882 ntBASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Shisa8J3QNX5 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shisa8J3QNX5 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shisa8J3QNX5 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.17■□□□□ 0.5
Shisa8J3QNX5 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.17■□□□□ 0.5
Shisa8J3QNX5 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.16■□□□□ 0.5
Shisa8J3QNX5 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Shisa8J3QNX5 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Shisa8J3QNX5 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Shisa8J3QNX5 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Shisa8J3QNX5 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Shisa8J3QNX5 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Golph3-205ENSMUST00000228671 2842 ntBASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shisa8J3QNX5 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Shisa8J3QNX5 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Shisa8J3QNX5 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.14■□□□□ 0.5
Shisa8J3QNX5 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shisa8J3QNX5 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shisa8J3QNX5 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms