Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Vps35Q9EQH3 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Vps35Q9EQH3 Gm24804-201ENSMUST00000174982 85 ntBASIC26.03■■□□□ 1.76
Vps35Q9EQH3 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Vps35Q9EQH3 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.01■■□□□ 1.75
Vps35Q9EQH3 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
Vps35Q9EQH3 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Vps35Q9EQH3 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26■■□□□ 1.75
Vps35Q9EQH3 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Vps35Q9EQH3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
Vps35Q9EQH3 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Vps35Q9EQH3 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Vps35Q9EQH3 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Vps35Q9EQH3 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Vps35Q9EQH3 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
Vps35Q9EQH3 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
Vps35Q9EQH3 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Vps35Q9EQH3 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC25.88■■□□□ 1.73
Vps35Q9EQH3 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC25.87■■□□□ 1.73
Vps35Q9EQH3 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Vps35Q9EQH3 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Vps35Q9EQH3 Gm2415-204ENSMUST00000190235 2004 ntBASIC25.85■■□□□ 1.73
Vps35Q9EQH3 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC25.84■■□□□ 1.73
Vps35Q9EQH3 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Vps35Q9EQH3 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Vps35Q9EQH3 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.72
Vps35Q9EQH3 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Vps35Q9EQH3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC25.81■■□□□ 1.72
Vps35Q9EQH3 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Vps35Q9EQH3 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Vps35Q9EQH3 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Vps35Q9EQH3 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Vps35Q9EQH3 Peli2-204ENSMUST00000226513 1320 ntBASIC25.78■■□□□ 1.72
Vps35Q9EQH3 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Vps35Q9EQH3 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Vps35Q9EQH3 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Vps35Q9EQH3 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
Vps35Q9EQH3 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Vps35Q9EQH3 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
Vps35Q9EQH3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC25.69■■□□□ 1.7
Vps35Q9EQH3 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Vps35Q9EQH3 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
Vps35Q9EQH3 Gm6658-202ENSMUST00000209493 1885 ntBASIC25.68■■□□□ 1.7
Vps35Q9EQH3 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Vps35Q9EQH3 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Vps35Q9EQH3 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Vps35Q9EQH3 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Vps35Q9EQH3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Vps35Q9EQH3 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Vps35Q9EQH3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Vps35Q9EQH3 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Vps35Q9EQH3 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC25.63■■□□□ 1.69
Vps35Q9EQH3 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Vps35Q9EQH3 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC25.59■■□□□ 1.69
Vps35Q9EQH3 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Vps35Q9EQH3 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
Vps35Q9EQH3 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
Vps35Q9EQH3 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Vps35Q9EQH3 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Vps35Q9EQH3 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Vps35Q9EQH3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC25.55■■□□□ 1.68
Vps35Q9EQH3 AC153504.1-201ENSMUST00000218379 2290 ntBASIC25.54■■□□□ 1.68
Vps35Q9EQH3 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Vps35Q9EQH3 Gm16148-201ENSMUST00000119653 893 ntBASIC25.52■■□□□ 1.68
Vps35Q9EQH3 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Vps35Q9EQH3 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Vps35Q9EQH3 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Vps35Q9EQH3 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Vps35Q9EQH3 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Vps35Q9EQH3 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Vps35Q9EQH3 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Vps35Q9EQH3 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
Vps35Q9EQH3 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
Vps35Q9EQH3 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC25.41■■□□□ 1.66
Vps35Q9EQH3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Vps35Q9EQH3 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Vps35Q9EQH3 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC25.4■■□□□ 1.66
Vps35Q9EQH3 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
Vps35Q9EQH3 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Vps35Q9EQH3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Vps35Q9EQH3 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC25.37■■□□□ 1.65
Vps35Q9EQH3 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Vps35Q9EQH3 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Vps35Q9EQH3 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Vps35Q9EQH3 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Vps35Q9EQH3 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Vps35Q9EQH3 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Vps35Q9EQH3 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
Vps35Q9EQH3 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC25.34■■□□□ 1.65
Vps35Q9EQH3 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC25.33■■□□□ 1.65
Vps35Q9EQH3 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
Vps35Q9EQH3 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Vps35Q9EQH3 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC25.31■■□□□ 1.64
Vps35Q9EQH3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Vps35Q9EQH3 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Vps35Q9EQH3 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Vps35Q9EQH3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Vps35Q9EQH3 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
Vps35Q9EQH3 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Vps35Q9EQH3 Zfp131-205ENSMUST00000223812 663 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms