Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26.86■■□□□ 1.89
Vps28Q9D1C8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Vps28Q9D1C8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Vps28Q9D1C8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Vps28Q9D1C8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Vps28Q9D1C8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Vps28Q9D1C8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.78■■□□□ 1.88
Vps28Q9D1C8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.78■■□□□ 1.88
Vps28Q9D1C8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Vps28Q9D1C8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Vps28Q9D1C8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
Vps28Q9D1C8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Vps28Q9D1C8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps28Q9D1C8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Vps28Q9D1C8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Vps28Q9D1C8 Peli2-204ENSMUST00000226513 1320 ntBASIC26.69■■□□□ 1.86
Vps28Q9D1C8 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Vps28Q9D1C8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC26.67■■□□□ 1.86
Vps28Q9D1C8 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Vps28Q9D1C8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Vps28Q9D1C8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Vps28Q9D1C8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Vps28Q9D1C8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
Vps28Q9D1C8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
Vps28Q9D1C8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Vps28Q9D1C8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Vps28Q9D1C8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Vps28Q9D1C8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Vps28Q9D1C8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Vps28Q9D1C8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
Vps28Q9D1C8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Vps28Q9D1C8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Vps28Q9D1C8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC26.58■■□□□ 1.85
Vps28Q9D1C8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Vps28Q9D1C8 Gm16148-201ENSMUST00000119653 893 ntBASIC26.57■■□□□ 1.84
Vps28Q9D1C8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
Vps28Q9D1C8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC26.54■■□□□ 1.84
Vps28Q9D1C8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Vps28Q9D1C8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Vps28Q9D1C8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Vps28Q9D1C8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Vps28Q9D1C8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Vps28Q9D1C8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.83
Vps28Q9D1C8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Vps28Q9D1C8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Vps28Q9D1C8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Vps28Q9D1C8 Zfp131-205ENSMUST00000223812 663 ntBASIC26.42■■□□□ 1.82
Vps28Q9D1C8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Vps28Q9D1C8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Vps28Q9D1C8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.39■■□□□ 1.82
Vps28Q9D1C8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Vps28Q9D1C8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Vps28Q9D1C8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
Vps28Q9D1C8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Vps28Q9D1C8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Vps28Q9D1C8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Vps28Q9D1C8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.33■■□□□ 1.81
Vps28Q9D1C8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.32■■□□□ 1.8
Vps28Q9D1C8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Vps28Q9D1C8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Vps28Q9D1C8 Gm2415-204ENSMUST00000190235 2004 ntBASIC26.31■■□□□ 1.8
Vps28Q9D1C8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Vps28Q9D1C8 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Vps28Q9D1C8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Vps28Q9D1C8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
Vps28Q9D1C8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Vps28Q9D1C8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Vps28Q9D1C8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.25■■□□□ 1.79
Vps28Q9D1C8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Vps28Q9D1C8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC26.23■■□□□ 1.79
Vps28Q9D1C8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC26.23■■□□□ 1.79
Vps28Q9D1C8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Vps28Q9D1C8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Vps28Q9D1C8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Vps28Q9D1C8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Vps28Q9D1C8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Vps28Q9D1C8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Vps28Q9D1C8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Vps28Q9D1C8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Vps28Q9D1C8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Vps28Q9D1C8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Vps28Q9D1C8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.17■■□□□ 1.78
Vps28Q9D1C8 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Vps28Q9D1C8 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Vps28Q9D1C8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Vps28Q9D1C8 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
Vps28Q9D1C8 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.14■■□□□ 1.78
Vps28Q9D1C8 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.13■■□□□ 1.77
Vps28Q9D1C8 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Vps28Q9D1C8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
Vps28Q9D1C8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.12■■□□□ 1.77
Vps28Q9D1C8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC26.12■■□□□ 1.77
Vps28Q9D1C8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.12■■□□□ 1.77
Vps28Q9D1C8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
Vps28Q9D1C8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC26.09■■□□□ 1.77
Vps28Q9D1C8 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Vps28Q9D1C8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Vps28Q9D1C8 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Vps28Q9D1C8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Vps28Q9D1C8 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.04■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms