Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Rpa1Q8VEE4 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Rpa1Q8VEE4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Rpa1Q8VEE4 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.08■■□□□ 1.77
Rpa1Q8VEE4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
Rpa1Q8VEE4 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.06■■□□□ 1.76
Rpa1Q8VEE4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
Rpa1Q8VEE4 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Rpa1Q8VEE4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Rpa1Q8VEE4 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Rpa1Q8VEE4 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Rpa1Q8VEE4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Rpa1Q8VEE4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Rpa1Q8VEE4 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Rpa1Q8VEE4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Rpa1Q8VEE4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.9■■□□□ 1.74
Rpa1Q8VEE4 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Rpa1Q8VEE4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
Rpa1Q8VEE4 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Rpa1Q8VEE4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
Rpa1Q8VEE4 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
Rpa1Q8VEE4 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Rpa1Q8VEE4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Rpa1Q8VEE4 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Rpa1Q8VEE4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25.85■■□□□ 1.73
Rpa1Q8VEE4 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Rpa1Q8VEE4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Rpa1Q8VEE4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Rpa1Q8VEE4 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Rpa1Q8VEE4 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Rpa1Q8VEE4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Rpa1Q8VEE4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Rpa1Q8VEE4 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC25.79■■□□□ 1.72
Rpa1Q8VEE4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.79■■□□□ 1.72
Rpa1Q8VEE4 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Rpa1Q8VEE4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
Rpa1Q8VEE4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
Rpa1Q8VEE4 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Rpa1Q8VEE4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25.77■■□□□ 1.72
Rpa1Q8VEE4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Rpa1Q8VEE4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Rpa1Q8VEE4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
Rpa1Q8VEE4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Rpa1Q8VEE4 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Rpa1Q8VEE4 Gm43445-201ENSMUST00000198564 2091 ntBASIC25.73■■□□□ 1.71
Rpa1Q8VEE4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Rpa1Q8VEE4 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC25.72■■□□□ 1.71
Rpa1Q8VEE4 Rab21-202ENSMUST00000218831 843 ntBASIC25.71■■□□□ 1.71
Rpa1Q8VEE4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Rpa1Q8VEE4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Rpa1Q8VEE4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Rpa1Q8VEE4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC25.7■■□□□ 1.7
Rpa1Q8VEE4 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Rpa1Q8VEE4 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Rpa1Q8VEE4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Rpa1Q8VEE4 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Rpa1Q8VEE4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Rpa1Q8VEE4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
Rpa1Q8VEE4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Rpa1Q8VEE4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Rpa1Q8VEE4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Rpa1Q8VEE4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
Rpa1Q8VEE4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Rpa1Q8VEE4 Mipep-204ENSMUST00000225043 1548 ntBASIC25.61■■□□□ 1.69
Rpa1Q8VEE4 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
Rpa1Q8VEE4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Rpa1Q8VEE4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Rpa1Q8VEE4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Rpa1Q8VEE4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
Rpa1Q8VEE4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
Rpa1Q8VEE4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Rpa1Q8VEE4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Rpa1Q8VEE4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Rpa1Q8VEE4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Rpa1Q8VEE4 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC25.56■■□□□ 1.68
Rpa1Q8VEE4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC25.55■■□□□ 1.68
Rpa1Q8VEE4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Rpa1Q8VEE4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Rpa1Q8VEE4 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Rpa1Q8VEE4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Rpa1Q8VEE4 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
Rpa1Q8VEE4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.48■■□□□ 1.67
Rpa1Q8VEE4 Amer2-203ENSMUST00000225247 2662 ntBASIC25.47■■□□□ 1.67
Rpa1Q8VEE4 AL845457.1-201ENSMUST00000197244 68 ntBASIC25.46■■□□□ 1.67
Rpa1Q8VEE4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Rpa1Q8VEE4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Rpa1Q8VEE4 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Rpa1Q8VEE4 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Rpa1Q8VEE4 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
Rpa1Q8VEE4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
Rpa1Q8VEE4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Rpa1Q8VEE4 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Rpa1Q8VEE4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC25.4■■□□□ 1.66
Rpa1Q8VEE4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
Rpa1Q8VEE4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
Rpa1Q8VEE4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
Rpa1Q8VEE4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
Rpa1Q8VEE4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Rpa1Q8VEE4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25.36■■□□□ 1.65
Rpa1Q8VEE4 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms