Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc9Q8VC31 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc9Q8VC31 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc9Q8VC31 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc9Q8VC31 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
Ccdc9Q8VC31 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC31.11■■■□□ 2.57
Ccdc9Q8VC31 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Ccdc9Q8VC31 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Ccdc9Q8VC31 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Ccdc9Q8VC31 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Ccdc9Q8VC31 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Ccdc9Q8VC31 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Ccdc9Q8VC31 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
Ccdc9Q8VC31 Gm43445-201ENSMUST00000198564 2091 ntBASIC31■■■□□ 2.55
Ccdc9Q8VC31 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Ccdc9Q8VC31 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Ccdc9Q8VC31 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
Ccdc9Q8VC31 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Ccdc9Q8VC31 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
Ccdc9Q8VC31 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc9Q8VC31 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc9Q8VC31 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc9Q8VC31 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc9Q8VC31 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
Ccdc9Q8VC31 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc9Q8VC31 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc9Q8VC31 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc9Q8VC31 Fezf2-202ENSMUST00000224023 1917 ntBASIC30.92■■■□□ 2.54
Ccdc9Q8VC31 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ccdc9Q8VC31 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Ccdc9Q8VC31 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC30.88■■■□□ 2.53
Ccdc9Q8VC31 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Ccdc9Q8VC31 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ccdc9Q8VC31 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
Ccdc9Q8VC31 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ccdc9Q8VC31 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
Ccdc9Q8VC31 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Ccdc9Q8VC31 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Ccdc9Q8VC31 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC30.74■■■□□ 2.51
Ccdc9Q8VC31 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ccdc9Q8VC31 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Ccdc9Q8VC31 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Ccdc9Q8VC31 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc9Q8VC31 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc9Q8VC31 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc9Q8VC31 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
Ccdc9Q8VC31 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC30.66■■■□□ 2.5
Ccdc9Q8VC31 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc9Q8VC31 Amer2-203ENSMUST00000225247 2662 ntBASIC30.65■■■□□ 2.5
Ccdc9Q8VC31 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc9Q8VC31 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.5
Ccdc9Q8VC31 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc9Q8VC31 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Ccdc9Q8VC31 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Ccdc9Q8VC31 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.62■■■□□ 2.49
Ccdc9Q8VC31 AC153890.1-201ENSMUST00000220021 2469 ntBASIC30.61■■■□□ 2.49
Ccdc9Q8VC31 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
Ccdc9Q8VC31 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Ccdc9Q8VC31 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ccdc9Q8VC31 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ccdc9Q8VC31 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc9Q8VC31 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc9Q8VC31 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc9Q8VC31 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc9Q8VC31 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
Ccdc9Q8VC31 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc9Q8VC31 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Ccdc9Q8VC31 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Ccdc9Q8VC31 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Ccdc9Q8VC31 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
Ccdc9Q8VC31 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ccdc9Q8VC31 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ccdc9Q8VC31 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ccdc9Q8VC31 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Ccdc9Q8VC31 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC30.44■■■□□ 2.46
Ccdc9Q8VC31 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
Ccdc9Q8VC31 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Ccdc9Q8VC31 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Ccdc9Q8VC31 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc9Q8VC31 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Ccdc9Q8VC31 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc9Q8VC31 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Ccdc9Q8VC31 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc9Q8VC31 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc9Q8VC31 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC30.35■■■□□ 2.45
Ccdc9Q8VC31 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc9Q8VC31 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc9Q8VC31 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Ccdc9Q8VC31 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.45
Ccdc9Q8VC31 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Ccdc9Q8VC31 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Ccdc9Q8VC31 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
Ccdc9Q8VC31 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC30.29■■■□□ 2.44
Ccdc9Q8VC31 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Ccdc9Q8VC31 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ccdc9Q8VC31 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
Ccdc9Q8VC31 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ccdc9Q8VC31 Gm25238-201ENSMUST00000174914 89 ntBASIC30.27■■■□□ 2.44
Ccdc9Q8VC31 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
Ccdc9Q8VC31 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Retrieved 100 of 76,532 protein–RNA pairs in 8.1 ms