Protein–RNA interactions for Protein: Q8CC84

Lysmd4, LysM and putative peptidoglycan-binding domain-containing protein 4, mousemouse

Predictions only

Length 293 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lysmd4Q8CC84 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Lysmd4Q8CC84 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC23.46■■□□□ 1.35
Lysmd4Q8CC84 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Lysmd4Q8CC84 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Lysmd4Q8CC84 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.43■■□□□ 1.34
Lysmd4Q8CC84 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Lysmd4Q8CC84 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
Lysmd4Q8CC84 Rab21-202ENSMUST00000218831 843 ntBASIC23.42■■□□□ 1.34
Lysmd4Q8CC84 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Lysmd4Q8CC84 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.4■■□□□ 1.34
Lysmd4Q8CC84 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Lysmd4Q8CC84 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Lysmd4Q8CC84 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Lysmd4Q8CC84 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Lysmd4Q8CC84 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Lysmd4Q8CC84 Zxda-201ENSMUST00000117281 2621 ntBASIC23.38■■□□□ 1.33
Lysmd4Q8CC84 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Lysmd4Q8CC84 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Lysmd4Q8CC84 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
Lysmd4Q8CC84 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
Lysmd4Q8CC84 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Lysmd4Q8CC84 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Lysmd4Q8CC84 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Lysmd4Q8CC84 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Lysmd4Q8CC84 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Lysmd4Q8CC84 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Lysmd4Q8CC84 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Lysmd4Q8CC84 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Lysmd4Q8CC84 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Lysmd4Q8CC84 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Lysmd4Q8CC84 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Lysmd4Q8CC84 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Lysmd4Q8CC84 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Lysmd4Q8CC84 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Lysmd4Q8CC84 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Lysmd4Q8CC84 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Lysmd4Q8CC84 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.24■■□□□ 1.31
Lysmd4Q8CC84 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Lysmd4Q8CC84 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Lysmd4Q8CC84 Mipep-204ENSMUST00000225043 1548 ntBASIC23.23■■□□□ 1.31
Lysmd4Q8CC84 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Lysmd4Q8CC84 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Lysmd4Q8CC84 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Lysmd4Q8CC84 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Lysmd4Q8CC84 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23.2■■□□□ 1.3
Lysmd4Q8CC84 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Lysmd4Q8CC84 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Lysmd4Q8CC84 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Lysmd4Q8CC84 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Lysmd4Q8CC84 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Lysmd4Q8CC84 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Lysmd4Q8CC84 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Lysmd4Q8CC84 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.16■■□□□ 1.3
Lysmd4Q8CC84 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Lysmd4Q8CC84 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
Lysmd4Q8CC84 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Lysmd4Q8CC84 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Lysmd4Q8CC84 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Lysmd4Q8CC84 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC23.13■■□□□ 1.29
Lysmd4Q8CC84 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.13■■□□□ 1.29
Lysmd4Q8CC84 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.12■■□□□ 1.29
Lysmd4Q8CC84 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.12■■□□□ 1.29
Lysmd4Q8CC84 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
Lysmd4Q8CC84 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Lysmd4Q8CC84 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Lysmd4Q8CC84 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
Lysmd4Q8CC84 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Lysmd4Q8CC84 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Lysmd4Q8CC84 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Lysmd4Q8CC84 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Lysmd4Q8CC84 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
Lysmd4Q8CC84 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
Lysmd4Q8CC84 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Lysmd4Q8CC84 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Lysmd4Q8CC84 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Lysmd4Q8CC84 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Lysmd4Q8CC84 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Lysmd4Q8CC84 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Lysmd4Q8CC84 Amer2-203ENSMUST00000225247 2662 ntBASIC22.93■■□□□ 1.26
Lysmd4Q8CC84 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.93■■□□□ 1.26
Lysmd4Q8CC84 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Lysmd4Q8CC84 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Lysmd4Q8CC84 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Lysmd4Q8CC84 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Lysmd4Q8CC84 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.87■■□□□ 1.25
Lysmd4Q8CC84 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Lysmd4Q8CC84 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Lysmd4Q8CC84 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
Lysmd4Q8CC84 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Lysmd4Q8CC84 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Lysmd4Q8CC84 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.84■■□□□ 1.25
Lysmd4Q8CC84 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Lysmd4Q8CC84 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Lysmd4Q8CC84 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Lysmd4Q8CC84 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Lysmd4Q8CC84 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Lysmd4Q8CC84 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
Lysmd4Q8CC84 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.8■■□□□ 1.24
Lysmd4Q8CC84 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Lysmd4Q8CC84 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms