Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.47■■■□□ 2.63
Trim56Q80VI1 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
Trim56Q80VI1 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
Trim56Q80VI1 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Trim56Q80VI1 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC31.4■■■□□ 2.62
Trim56Q80VI1 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
Trim56Q80VI1 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Trim56Q80VI1 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Trim56Q80VI1 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
Trim56Q80VI1 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Trim56Q80VI1 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Trim56Q80VI1 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Trim56Q80VI1 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Trim56Q80VI1 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Trim56Q80VI1 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Trim56Q80VI1 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Trim56Q80VI1 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC31.29■■■□□ 2.6
Trim56Q80VI1 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Trim56Q80VI1 Peli2-204ENSMUST00000226513 1320 ntBASIC31.24■■■□□ 2.59
Trim56Q80VI1 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC31.22■■■□□ 2.59
Trim56Q80VI1 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.21■■■□□ 2.59
Trim56Q80VI1 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Trim56Q80VI1 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Trim56Q80VI1 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Trim56Q80VI1 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Trim56Q80VI1 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Trim56Q80VI1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Trim56Q80VI1 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Trim56Q80VI1 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Trim56Q80VI1 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Trim56Q80VI1 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.58
Trim56Q80VI1 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
Trim56Q80VI1 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Trim56Q80VI1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.1■■■□□ 2.57
Trim56Q80VI1 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC31.1■■■□□ 2.57
Trim56Q80VI1 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
Trim56Q80VI1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Trim56Q80VI1 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.57
Trim56Q80VI1 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Trim56Q80VI1 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim56Q80VI1 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim56Q80VI1 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC31.03■■■□□ 2.56
Trim56Q80VI1 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
Trim56Q80VI1 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
Trim56Q80VI1 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
Trim56Q80VI1 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Trim56Q80VI1 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Trim56Q80VI1 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Trim56Q80VI1 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Trim56Q80VI1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Trim56Q80VI1 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
Trim56Q80VI1 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Trim56Q80VI1 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.93■■■□□ 2.54
Trim56Q80VI1 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Trim56Q80VI1 Gm16148-201ENSMUST00000119653 893 ntBASIC30.87■■■□□ 2.53
Trim56Q80VI1 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Trim56Q80VI1 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Trim56Q80VI1 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Trim56Q80VI1 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Trim56Q80VI1 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Trim56Q80VI1 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Trim56Q80VI1 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC30.75■■■□□ 2.51
Trim56Q80VI1 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
Trim56Q80VI1 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
Trim56Q80VI1 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC30.73■■■□□ 2.51
Trim56Q80VI1 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Trim56Q80VI1 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC30.72■■■□□ 2.51
Trim56Q80VI1 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Trim56Q80VI1 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Trim56Q80VI1 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Trim56Q80VI1 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Trim56Q80VI1 Zfp131-205ENSMUST00000223812 663 ntBASIC30.68■■■□□ 2.5
Trim56Q80VI1 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Trim56Q80VI1 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC30.66■■■□□ 2.5
Trim56Q80VI1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Trim56Q80VI1 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Trim56Q80VI1 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
Trim56Q80VI1 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC30.62■■■□□ 2.49
Trim56Q80VI1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
Trim56Q80VI1 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim56Q80VI1 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Trim56Q80VI1 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC30.6■■■□□ 2.49
Trim56Q80VI1 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim56Q80VI1 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim56Q80VI1 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim56Q80VI1 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim56Q80VI1 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Trim56Q80VI1 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Trim56Q80VI1 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC30.54■■■□□ 2.48
Trim56Q80VI1 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Trim56Q80VI1 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Trim56Q80VI1 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
Trim56Q80VI1 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim56Q80VI1 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim56Q80VI1 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim56Q80VI1 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim56Q80VI1 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Trim56Q80VI1 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Trim56Q80VI1 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC30.51■■■□□ 2.47
Trim56Q80VI1 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms