Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Rnf220Q6PDX6 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Rnf220Q6PDX6 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC24.38■■□□□ 1.49
Rnf220Q6PDX6 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Rnf220Q6PDX6 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
Rnf220Q6PDX6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.35■■□□□ 1.49
Rnf220Q6PDX6 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Rnf220Q6PDX6 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Rnf220Q6PDX6 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Rnf220Q6PDX6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Rnf220Q6PDX6 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Rnf220Q6PDX6 Gm6658-202ENSMUST00000209493 1885 ntBASIC24.29■■□□□ 1.48
Rnf220Q6PDX6 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Rnf220Q6PDX6 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Rnf220Q6PDX6 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
Rnf220Q6PDX6 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Rnf220Q6PDX6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
Rnf220Q6PDX6 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
Rnf220Q6PDX6 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Rnf220Q6PDX6 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Rnf220Q6PDX6 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Rnf220Q6PDX6 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Rnf220Q6PDX6 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Rnf220Q6PDX6 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Rnf220Q6PDX6 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Rnf220Q6PDX6 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
Rnf220Q6PDX6 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
Rnf220Q6PDX6 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Rnf220Q6PDX6 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Rnf220Q6PDX6 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Rnf220Q6PDX6 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC24.15■■□□□ 1.46
Rnf220Q6PDX6 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
Rnf220Q6PDX6 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Rnf220Q6PDX6 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Rnf220Q6PDX6 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Rnf220Q6PDX6 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Rnf220Q6PDX6 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Rnf220Q6PDX6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.12■■□□□ 1.45
Rnf220Q6PDX6 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Rnf220Q6PDX6 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
Rnf220Q6PDX6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.11■■□□□ 1.45
Rnf220Q6PDX6 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
Rnf220Q6PDX6 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Rnf220Q6PDX6 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.09■■□□□ 1.45
Rnf220Q6PDX6 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Rnf220Q6PDX6 Amer2-203ENSMUST00000225247 2662 ntBASIC24.07■■□□□ 1.44
Rnf220Q6PDX6 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Rnf220Q6PDX6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.06■■□□□ 1.44
Rnf220Q6PDX6 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Rnf220Q6PDX6 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
Rnf220Q6PDX6 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Rnf220Q6PDX6 AC153890.1-201ENSMUST00000220021 2469 ntBASIC24.02■■□□□ 1.44
Rnf220Q6PDX6 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Rnf220Q6PDX6 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Rnf220Q6PDX6 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Rnf220Q6PDX6 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Rnf220Q6PDX6 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Rnf220Q6PDX6 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC23.96■■□□□ 1.43
Rnf220Q6PDX6 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Rnf220Q6PDX6 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
Rnf220Q6PDX6 Rab21-202ENSMUST00000218831 843 ntBASIC23.95■■□□□ 1.42
Rnf220Q6PDX6 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Rnf220Q6PDX6 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Rnf220Q6PDX6 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
Rnf220Q6PDX6 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Rnf220Q6PDX6 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Rnf220Q6PDX6 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Rnf220Q6PDX6 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Rnf220Q6PDX6 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Rnf220Q6PDX6 Zfp131-207ENSMUST00000224946 1783 ntBASIC23.86■■□□□ 1.41
Rnf220Q6PDX6 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Rnf220Q6PDX6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Rnf220Q6PDX6 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Rnf220Q6PDX6 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
Rnf220Q6PDX6 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Rnf220Q6PDX6 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.82■■□□□ 1.4
Rnf220Q6PDX6 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Rnf220Q6PDX6 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rnf220Q6PDX6 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rnf220Q6PDX6 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rnf220Q6PDX6 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rnf220Q6PDX6 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rnf220Q6PDX6 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Rnf220Q6PDX6 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Rnf220Q6PDX6 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Rnf220Q6PDX6 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Rnf220Q6PDX6 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC23.79■■□□□ 1.4
Rnf220Q6PDX6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Rnf220Q6PDX6 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
Rnf220Q6PDX6 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Rnf220Q6PDX6 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Rnf220Q6PDX6 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Rnf220Q6PDX6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23.76■■□□□ 1.39
Rnf220Q6PDX6 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Rnf220Q6PDX6 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Rnf220Q6PDX6 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Rnf220Q6PDX6 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.74■■□□□ 1.39
Rnf220Q6PDX6 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Rnf220Q6PDX6 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.71■■□□□ 1.39
Rnf220Q6PDX6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms