Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22.23■■□□□ 1.15
Trav6d-4Q5R1I0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav6d-4Q5R1I0 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Trav6d-4Q5R1I0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Trav6d-4Q5R1I0 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trav6d-4Q5R1I0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Trav6d-4Q5R1I0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Trav6d-4Q5R1I0 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trav6d-4Q5R1I0 Peli2-204ENSMUST00000226513 1320 ntBASIC22.16■■□□□ 1.14
Trav6d-4Q5R1I0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.14■■□□□ 1.13
Trav6d-4Q5R1I0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Trav6d-4Q5R1I0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Trav6d-4Q5R1I0 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trav6d-4Q5R1I0 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trav6d-4Q5R1I0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Trav6d-4Q5R1I0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Trav6d-4Q5R1I0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Trav6d-4Q5R1I0 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav6d-4Q5R1I0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav6d-4Q5R1I0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
Trav6d-4Q5R1I0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Trav6d-4Q5R1I0 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav6d-4Q5R1I0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Trav6d-4Q5R1I0 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trav6d-4Q5R1I0 Gm16148-201ENSMUST00000119653 893 ntBASIC22.05■■□□□ 1.12
Trav6d-4Q5R1I0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC22.04■■□□□ 1.12
Trav6d-4Q5R1I0 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.03■■□□□ 1.12
Trav6d-4Q5R1I0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav6d-4Q5R1I0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22■■□□□ 1.11
Trav6d-4Q5R1I0 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trav6d-4Q5R1I0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trav6d-4Q5R1I0 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trav6d-4Q5R1I0 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Trav6d-4Q5R1I0 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trav6d-4Q5R1I0 Zfp131-205ENSMUST00000223812 663 ntBASIC21.94■■□□□ 1.1
Trav6d-4Q5R1I0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trav6d-4Q5R1I0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Trav6d-4Q5R1I0 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Trav6d-4Q5R1I0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Trav6d-4Q5R1I0 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
Trav6d-4Q5R1I0 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trav6d-4Q5R1I0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trav6d-4Q5R1I0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav6d-4Q5R1I0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav6d-4Q5R1I0 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC21.85■■□□□ 1.09
Trav6d-4Q5R1I0 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav6d-4Q5R1I0 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Trav6d-4Q5R1I0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Trav6d-4Q5R1I0 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav6d-4Q5R1I0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav6d-4Q5R1I0 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.81■■□□□ 1.08
Trav6d-4Q5R1I0 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trav6d-4Q5R1I0 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav6d-4Q5R1I0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
Trav6d-4Q5R1I0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC21.8■■□□□ 1.08
Trav6d-4Q5R1I0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC21.79■■□□□ 1.08
Trav6d-4Q5R1I0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trav6d-4Q5R1I0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav6d-4Q5R1I0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trav6d-4Q5R1I0 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav6d-4Q5R1I0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav6d-4Q5R1I0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav6d-4Q5R1I0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav6d-4Q5R1I0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav6d-4Q5R1I0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav6d-4Q5R1I0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.73■■□□□ 1.07
Trav6d-4Q5R1I0 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trav6d-4Q5R1I0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav6d-4Q5R1I0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trav6d-4Q5R1I0 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav6d-4Q5R1I0 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav6d-4Q5R1I0 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Trav6d-4Q5R1I0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Trav6d-4Q5R1I0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Trav6d-4Q5R1I0 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC21.7■■□□□ 1.06
Trav6d-4Q5R1I0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav6d-4Q5R1I0 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav6d-4Q5R1I0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
Trav6d-4Q5R1I0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC21.67■■□□□ 1.06
Trav6d-4Q5R1I0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Trav6d-4Q5R1I0 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC21.66■■□□□ 1.06
Trav6d-4Q5R1I0 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.66■■□□□ 1.06
Trav6d-4Q5R1I0 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.65■■□□□ 1.06
Trav6d-4Q5R1I0 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trav6d-4Q5R1I0 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.64■■□□□ 1.05
Trav6d-4Q5R1I0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.63■■□□□ 1.05
Trav6d-4Q5R1I0 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6d-4Q5R1I0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6d-4Q5R1I0 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.61■■□□□ 1.05
Trav6d-4Q5R1I0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
Trav6d-4Q5R1I0 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trav6d-4Q5R1I0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trav6d-4Q5R1I0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav6d-4Q5R1I0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav6d-4Q5R1I0 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trav6d-4Q5R1I0 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trav6d-4Q5R1I0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Trav6d-4Q5R1I0 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav6d-4Q5R1I0 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC21.54■■□□□ 1.04
Trav6d-4Q5R1I0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms