Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC28.28■■■□□ 2.12
Sox1P53783 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Sox1P53783 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC28.22■■■□□ 2.11
Sox1P53783 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Sox1P53783 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Sox1P53783 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Sox1P53783 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC28.18■■■□□ 2.1
Sox1P53783 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC28.17■■■□□ 2.1
Sox1P53783 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Sox1P53783 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
Sox1P53783 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Sox1P53783 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC28.11■■■□□ 2.09
Sox1P53783 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Sox1P53783 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Sox1P53783 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Sox1P53783 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC28.01■■■□□ 2.07
Sox1P53783 Gm42596-201ENSMUST00000196305 1958 ntBASIC28■■■□□ 2.07
Sox1P53783 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC28■■■□□ 2.07
Sox1P53783 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Sox1P53783 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC28■■■□□ 2.07
Sox1P53783 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Sox1P53783 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Sox1P53783 Gm10524-201ENSMUST00000181931 1893 ntBASIC27.99■■■□□ 2.07
Sox1P53783 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Sox1P53783 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Sox1P53783 Gm9939-201ENSMUST00000067161 1154 ntBASIC27.96■■■□□ 2.07
Sox1P53783 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Sox1P53783 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.92■■■□□ 2.06
Sox1P53783 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Sox1P53783 Gm8503-201ENSMUST00000118131 455 ntBASIC27.91■■■□□ 2.06
Sox1P53783 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC27.9■■■□□ 2.06
Sox1P53783 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Sox1P53783 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Sox1P53783 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27.85■■■□□ 2.05
Sox1P53783 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.84■■■□□ 2.05
Sox1P53783 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27.83■■■□□ 2.05
Sox1P53783 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27.83■■■□□ 2.05
Sox1P53783 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC27.83■■■□□ 2.05
Sox1P53783 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Sox1P53783 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Sox1P53783 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC27.71■■■□□ 2.03
Sox1P53783 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC27.7■■■□□ 2.03
Sox1P53783 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Sox1P53783 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
Sox1P53783 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Sox1P53783 Gm6821-201ENSMUST00000107540 542 ntBASIC27.69■■■□□ 2.02
Sox1P53783 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Sox1P53783 Gm24970-201ENSMUST00000175582 82 ntBASIC27.66■■■□□ 2.02
Sox1P53783 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27.66■■■□□ 2.02
Sox1P53783 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Sox1P53783 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Sox1P53783 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Sox1P53783 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
Sox1P53783 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Sox1P53783 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC27.56■■■□□ 2
Sox1P53783 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Sox1P53783 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Sox1P53783 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC27.53■■■□□ 2
Sox1P53783 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Sox1P53783 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Sox1P53783 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC27.5■■□□□ 1.99
Sox1P53783 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.49■■□□□ 1.99
Sox1P53783 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
Sox1P53783 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Sox1P53783 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Sox1P53783 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Sox1P53783 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC27.38■■□□□ 1.97
Sox1P53783 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Sox1P53783 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Sox1P53783 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Sox1P53783 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Sox1P53783 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC27.29■■□□□ 1.96
Sox1P53783 Zfp131-207ENSMUST00000224946 1783 ntBASIC27.27■■□□□ 1.96
Sox1P53783 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Sox1P53783 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC27.25■■□□□ 1.95
Sox1P53783 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Sox1P53783 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Sox1P53783 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Sox1P53783 Mipep-204ENSMUST00000225043 1548 ntBASIC27.23■■□□□ 1.95
Sox1P53783 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Sox1P53783 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC27.22■■□□□ 1.95
Sox1P53783 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
Sox1P53783 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
Sox1P53783 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
Sox1P53783 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC27.18■■□□□ 1.94
Sox1P53783 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27.17■■□□□ 1.94
Sox1P53783 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Sox1P53783 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Sox1P53783 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
Sox1P53783 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Sox1P53783 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Sox1P53783 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27.11■■□□□ 1.93
Sox1P53783 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC27.11■■□□□ 1.93
Sox1P53783 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC27.1■■□□□ 1.93
Sox1P53783 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Sox1P53783 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
Sox1P53783 Gm42809-201ENSMUST00000198429 1138 ntBASIC27.09■■□□□ 1.93
Sox1P53783 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Sox1P53783 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC27.08■■□□□ 1.93
Sox1P53783 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
Retrieved 100 of 76,532 protein–RNA pairs in 9.1 ms