Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Slc6a1P31648 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.3■■□□□ 1.16
Slc6a1P31648 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Slc6a1P31648 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Slc6a1P31648 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Slc6a1P31648 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.26■■□□□ 1.15
Slc6a1P31648 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Slc6a1P31648 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Slc6a1P31648 Gm25262-201ENSMUST00000174934 133 ntBASIC22.25■■□□□ 1.15
Slc6a1P31648 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Slc6a1P31648 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Slc6a1P31648 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Slc6a1P31648 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Slc6a1P31648 Rab21-202ENSMUST00000218831 843 ntBASIC22.2■■□□□ 1.14
Slc6a1P31648 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Slc6a1P31648 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Slc6a1P31648 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Slc6a1P31648 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Slc6a1P31648 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
Slc6a1P31648 Gm43445-201ENSMUST00000198564 2091 ntBASIC22.18■■□□□ 1.14
Slc6a1P31648 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Slc6a1P31648 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Slc6a1P31648 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Slc6a1P31648 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Slc6a1P31648 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Slc6a1P31648 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC22.12■■□□□ 1.13
Slc6a1P31648 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Slc6a1P31648 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Slc6a1P31648 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Slc6a1P31648 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Slc6a1P31648 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Slc6a1P31648 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Slc6a1P31648 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Slc6a1P31648 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC22.03■■□□□ 1.12
Slc6a1P31648 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Slc6a1P31648 Zfp131-207ENSMUST00000224946 1783 ntBASIC22.02■■□□□ 1.11
Slc6a1P31648 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Slc6a1P31648 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Slc6a1P31648 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC21.99■■□□□ 1.11
Slc6a1P31648 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Slc6a1P31648 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Slc6a1P31648 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Slc6a1P31648 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Slc6a1P31648 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Slc6a1P31648 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Slc6a1P31648 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Slc6a1P31648 Amer2-203ENSMUST00000225247 2662 ntBASIC21.94■■□□□ 1.1
Slc6a1P31648 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Slc6a1P31648 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Slc6a1P31648 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Slc6a1P31648 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.92■■□□□ 1.1
Slc6a1P31648 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Slc6a1P31648 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Slc6a1P31648 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Slc6a1P31648 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC21.9■■□□□ 1.1
Slc6a1P31648 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Slc6a1P31648 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.87■■□□□ 1.09
Slc6a1P31648 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.87■■□□□ 1.09
Slc6a1P31648 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Slc6a1P31648 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Slc6a1P31648 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Slc6a1P31648 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.84■■□□□ 1.09
Slc6a1P31648 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
Slc6a1P31648 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Slc6a1P31648 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
Slc6a1P31648 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Slc6a1P31648 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Slc6a1P31648 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Slc6a1P31648 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Slc6a1P31648 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Slc6a1P31648 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Slc6a1P31648 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Slc6a1P31648 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC21.78■■□□□ 1.08
Slc6a1P31648 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Slc6a1P31648 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Slc6a1P31648 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Slc6a1P31648 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Slc6a1P31648 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Slc6a1P31648 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Slc6a1P31648 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Slc6a1P31648 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Slc6a1P31648 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Slc6a1P31648 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Slc6a1P31648 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Slc6a1P31648 Gm26115-201ENSMUST00000175605 87 ntBASIC21.67■■□□□ 1.06
Slc6a1P31648 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.66■■□□□ 1.06
Slc6a1P31648 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.66■■□□□ 1.06
Slc6a1P31648 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Slc6a1P31648 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Slc6a1P31648 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.65■■□□□ 1.06
Slc6a1P31648 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Slc6a1P31648 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms