Protein–RNA interactions for Protein: O88427

Cacna1h, Voltage-dependent T-type calcium channel subunit alpha-1H, mousemouse

Predictions only

Length 2,365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1hO88427 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
Cacna1hO88427 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
Cacna1hO88427 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Cacna1hO88427 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Cacna1hO88427 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.19■■□□□ 1.94
Cacna1hO88427 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Cacna1hO88427 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC27.18■■□□□ 1.94
Cacna1hO88427 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Cacna1hO88427 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC27.16■■□□□ 1.94
Cacna1hO88427 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC27.14■■□□□ 1.94
Cacna1hO88427 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Cacna1hO88427 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC27.14■■□□□ 1.93
Cacna1hO88427 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
Cacna1hO88427 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Cacna1hO88427 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Cacna1hO88427 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC27.1■■□□□ 1.93
Cacna1hO88427 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.1■■□□□ 1.93
Cacna1hO88427 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Cacna1hO88427 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Cacna1hO88427 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Cacna1hO88427 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC27.02■■□□□ 1.92
Cacna1hO88427 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Cacna1hO88427 Gm10524-201ENSMUST00000181931 1893 ntBASIC27.02■■□□□ 1.92
Cacna1hO88427 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Cacna1hO88427 Gm8503-201ENSMUST00000118131 455 ntBASIC27.01■■□□□ 1.91
Cacna1hO88427 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Cacna1hO88427 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Cacna1hO88427 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC26.95■■□□□ 1.91
Cacna1hO88427 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Cacna1hO88427 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC26.93■■□□□ 1.9
Cacna1hO88427 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.93■■□□□ 1.9
Cacna1hO88427 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.88■■□□□ 1.89
Cacna1hO88427 Gm9939-201ENSMUST00000067161 1154 ntBASIC26.84■■□□□ 1.89
Cacna1hO88427 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Cacna1hO88427 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Cacna1hO88427 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Cacna1hO88427 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Cacna1hO88427 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Cacna1hO88427 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.78■■□□□ 1.88
Cacna1hO88427 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Cacna1hO88427 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC26.76■■□□□ 1.87
Cacna1hO88427 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
Cacna1hO88427 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Cacna1hO88427 Gm24970-201ENSMUST00000175582 82 ntBASIC26.72■■□□□ 1.87
Cacna1hO88427 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Cacna1hO88427 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Cacna1hO88427 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC26.71■■□□□ 1.87
Cacna1hO88427 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Cacna1hO88427 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Cacna1hO88427 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Cacna1hO88427 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
Cacna1hO88427 Gm6821-201ENSMUST00000107540 542 ntBASIC26.65■■□□□ 1.86
Cacna1hO88427 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Cacna1hO88427 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Cacna1hO88427 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC26.6■■□□□ 1.85
Cacna1hO88427 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC26.58■■□□□ 1.85
Cacna1hO88427 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Cacna1hO88427 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cacna1hO88427 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Cacna1hO88427 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cacna1hO88427 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
Cacna1hO88427 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cacna1hO88427 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.51■■□□□ 1.83
Cacna1hO88427 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cacna1hO88427 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC26.45■■□□□ 1.82
Cacna1hO88427 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Cacna1hO88427 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Cacna1hO88427 Zfp131-207ENSMUST00000224946 1783 ntBASIC26.43■■□□□ 1.82
Cacna1hO88427 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Cacna1hO88427 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Cacna1hO88427 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Cacna1hO88427 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Cacna1hO88427 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC26.31■■□□□ 1.8
Cacna1hO88427 Gm7432-201ENSMUST00000210343 879 ntBASIC26.31■■□□□ 1.8
Cacna1hO88427 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cacna1hO88427 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cacna1hO88427 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cacna1hO88427 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.29■■□□□ 1.8
Cacna1hO88427 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
Cacna1hO88427 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.27■■□□□ 1.8
Cacna1hO88427 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC26.27■■□□□ 1.8
Cacna1hO88427 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
Cacna1hO88427 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.26■■□□□ 1.79
Cacna1hO88427 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.25■■□□□ 1.79
Cacna1hO88427 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Cacna1hO88427 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
Cacna1hO88427 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Cacna1hO88427 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.22■■□□□ 1.79
Cacna1hO88427 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Cacna1hO88427 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Cacna1hO88427 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Cacna1hO88427 Mipep-204ENSMUST00000225043 1548 ntBASIC26.15■■□□□ 1.78
Cacna1hO88427 Mir6538-201ENSMUST00000183713 110 ntBASIC26.15■■□□□ 1.78
Cacna1hO88427 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Cacna1hO88427 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Cacna1hO88427 Gm42809-201ENSMUST00000198429 1138 ntBASIC26.13■■□□□ 1.77
Cacna1hO88427 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Cacna1hO88427 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.13■■□□□ 1.77
Cacna1hO88427 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Cacna1hO88427 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.12■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms