Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdh1F7BJK1 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdh1F7BJK1 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
Pcdh1F7BJK1 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Pcdh1F7BJK1 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdh1F7BJK1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdh1F7BJK1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23.45■■□□□ 1.34
Pcdh1F7BJK1 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.43■■□□□ 1.34
Pcdh1F7BJK1 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdh1F7BJK1 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdh1F7BJK1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdh1F7BJK1 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.4■■□□□ 1.34
Pcdh1F7BJK1 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
Pcdh1F7BJK1 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.39■■□□□ 1.34
Pcdh1F7BJK1 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Pcdh1F7BJK1 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Pcdh1F7BJK1 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
Pcdh1F7BJK1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdh1F7BJK1 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.37■■□□□ 1.33
Pcdh1F7BJK1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.35■■□□□ 1.33
Pcdh1F7BJK1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdh1F7BJK1 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.34■■□□□ 1.33
Pcdh1F7BJK1 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Pcdh1F7BJK1 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Pcdh1F7BJK1 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdh1F7BJK1 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdh1F7BJK1 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdh1F7BJK1 Mipep-204ENSMUST00000225043 1548 ntBASIC23.3■■□□□ 1.32
Pcdh1F7BJK1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdh1F7BJK1 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdh1F7BJK1 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdh1F7BJK1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Pcdh1F7BJK1 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdh1F7BJK1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Pcdh1F7BJK1 Zxda-201ENSMUST00000117281 2621 ntBASIC23.29■■□□□ 1.32
Pcdh1F7BJK1 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdh1F7BJK1 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdh1F7BJK1 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdh1F7BJK1 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Pcdh1F7BJK1 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.25■■□□□ 1.31
Pcdh1F7BJK1 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Pcdh1F7BJK1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdh1F7BJK1 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdh1F7BJK1 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdh1F7BJK1 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdh1F7BJK1 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Pcdh1F7BJK1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdh1F7BJK1 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdh1F7BJK1 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdh1F7BJK1 Gm25262-201ENSMUST00000174934 133 ntBASIC23.17■■□□□ 1.3
Pcdh1F7BJK1 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdh1F7BJK1 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdh1F7BJK1 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.15■■□□□ 1.3
Pcdh1F7BJK1 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC23.15■■□□□ 1.3
Pcdh1F7BJK1 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdh1F7BJK1 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.11■■□□□ 1.29
Pcdh1F7BJK1 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Pcdh1F7BJK1 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdh1F7BJK1 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdh1F7BJK1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdh1F7BJK1 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdh1F7BJK1 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdh1F7BJK1 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Pcdh1F7BJK1 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdh1F7BJK1 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdh1F7BJK1 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdh1F7BJK1 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Pcdh1F7BJK1 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Pcdh1F7BJK1 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
Pcdh1F7BJK1 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Pcdh1F7BJK1 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Pcdh1F7BJK1 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.03■■□□□ 1.28
Pcdh1F7BJK1 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Pcdh1F7BJK1 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Pcdh1F7BJK1 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Pcdh1F7BJK1 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Pcdh1F7BJK1 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Pcdh1F7BJK1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Pcdh1F7BJK1 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Pcdh1F7BJK1 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Pcdh1F7BJK1 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Pcdh1F7BJK1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
Pcdh1F7BJK1 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Pcdh1F7BJK1 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Pcdh1F7BJK1 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdh1F7BJK1 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdh1F7BJK1 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Pcdh1F7BJK1 Amer2-203ENSMUST00000225247 2662 ntBASIC22.85■■□□□ 1.25
Pcdh1F7BJK1 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.84■■□□□ 1.25
Pcdh1F7BJK1 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Pcdh1F7BJK1 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
Pcdh1F7BJK1 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Pcdh1F7BJK1 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Pcdh1F7BJK1 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Pcdh1F7BJK1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Pcdh1F7BJK1 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdh1F7BJK1 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Pcdh1F7BJK1 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Pcdh1F7BJK1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Pcdh1F7BJK1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC22.76■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 7.9 ms