Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Chd3B1AR17 Peli2-204ENSMUST00000226513 1320 ntBASIC26.25■■□□□ 1.79
Chd3B1AR17 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Chd3B1AR17 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Chd3B1AR17 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Chd3B1AR17 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Chd3B1AR17 Zfp131-205ENSMUST00000223812 663 ntBASIC26.21■■□□□ 1.79
Chd3B1AR17 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd3B1AR17 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Chd3B1AR17 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Chd3B1AR17 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Chd3B1AR17 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Chd3B1AR17 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
Chd3B1AR17 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
Chd3B1AR17 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Chd3B1AR17 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Chd3B1AR17 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Chd3B1AR17 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Chd3B1AR17 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Chd3B1AR17 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
Chd3B1AR17 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
Chd3B1AR17 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Chd3B1AR17 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC26.06■■□□□ 1.76
Chd3B1AR17 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
Chd3B1AR17 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Chd3B1AR17 Gm16148-201ENSMUST00000119653 893 ntBASIC26.02■■□□□ 1.76
Chd3B1AR17 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Chd3B1AR17 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
Chd3B1AR17 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Chd3B1AR17 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Chd3B1AR17 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
Chd3B1AR17 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
Chd3B1AR17 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Chd3B1AR17 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC25.97■■□□□ 1.75
Chd3B1AR17 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Chd3B1AR17 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Chd3B1AR17 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
Chd3B1AR17 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC25.92■■□□□ 1.74
Chd3B1AR17 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Chd3B1AR17 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Chd3B1AR17 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Chd3B1AR17 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Chd3B1AR17 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC25.89■■□□□ 1.74
Chd3B1AR17 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Chd3B1AR17 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Chd3B1AR17 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC25.89■■□□□ 1.73
Chd3B1AR17 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC25.86■■□□□ 1.73
Chd3B1AR17 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Chd3B1AR17 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.73
Chd3B1AR17 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Chd3B1AR17 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Chd3B1AR17 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
Chd3B1AR17 Gm2415-204ENSMUST00000190235 2004 ntBASIC25.77■■□□□ 1.72
Chd3B1AR17 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC25.73■■□□□ 1.71
Chd3B1AR17 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.73■■□□□ 1.71
Chd3B1AR17 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Chd3B1AR17 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC25.7■■□□□ 1.7
Chd3B1AR17 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Chd3B1AR17 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Chd3B1AR17 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Chd3B1AR17 Tdp2-203ENSMUST00000223804 1136 ntBASIC25.66■■□□□ 1.7
Chd3B1AR17 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Chd3B1AR17 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Chd3B1AR17 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Chd3B1AR17 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Chd3B1AR17 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Chd3B1AR17 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Chd3B1AR17 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Chd3B1AR17 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
Chd3B1AR17 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC25.59■■□□□ 1.69
Chd3B1AR17 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Chd3B1AR17 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Chd3B1AR17 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
Chd3B1AR17 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
Chd3B1AR17 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
Chd3B1AR17 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Chd3B1AR17 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Chd3B1AR17 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC25.5■■□□□ 1.67
Chd3B1AR17 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
Chd3B1AR17 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Chd3B1AR17 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Chd3B1AR17 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC25.48■■□□□ 1.67
Chd3B1AR17 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Chd3B1AR17 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Chd3B1AR17 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Chd3B1AR17 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Chd3B1AR17 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC25.46■■□□□ 1.67
Chd3B1AR17 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC25.45■■□□□ 1.66
Chd3B1AR17 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Chd3B1AR17 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Chd3B1AR17 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Chd3B1AR17 Gm45855-201ENSMUST00000212546 880 ntBASIC25.44■■□□□ 1.66
Chd3B1AR17 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Chd3B1AR17 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Chd3B1AR17 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Chd3B1AR17 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Chd3B1AR17 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC25.43■■□□□ 1.66
Chd3B1AR17 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC25.43■■□□□ 1.66
Chd3B1AR17 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC25.43■■□□□ 1.66
Chd3B1AR17 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms