Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC19.62■□□□□ 0.73
Trav9-4A0A0B4J1K2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.62■□□□□ 0.73
Trav9-4A0A0B4J1K2 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav9-4A0A0B4J1K2 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trav9-4A0A0B4J1K2 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trav9-4A0A0B4J1K2 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav9-4A0A0B4J1K2 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trav9-4A0A0B4J1K2 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trav9-4A0A0B4J1K2 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.57■□□□□ 0.72
Trav9-4A0A0B4J1K2 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trav9-4A0A0B4J1K2 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.56■□□□□ 0.72
Trav9-4A0A0B4J1K2 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trav9-4A0A0B4J1K2 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trav9-4A0A0B4J1K2 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav9-4A0A0B4J1K2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav9-4A0A0B4J1K2 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav9-4A0A0B4J1K2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav9-4A0A0B4J1K2 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trav9-4A0A0B4J1K2 Gm24804-201ENSMUST00000174982 85 ntBASIC19.48■□□□□ 0.71
Trav9-4A0A0B4J1K2 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav9-4A0A0B4J1K2 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav9-4A0A0B4J1K2 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav9-4A0A0B4J1K2 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav9-4A0A0B4J1K2 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.44■□□□□ 0.7
Trav9-4A0A0B4J1K2 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trav9-4A0A0B4J1K2 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav9-4A0A0B4J1K2 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav9-4A0A0B4J1K2 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trav9-4A0A0B4J1K2 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav9-4A0A0B4J1K2 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trav9-4A0A0B4J1K2 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav9-4A0A0B4J1K2 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav9-4A0A0B4J1K2 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav9-4A0A0B4J1K2 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav9-4A0A0B4J1K2 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
Trav9-4A0A0B4J1K2 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav9-4A0A0B4J1K2 Peli2-204ENSMUST00000226513 1320 ntBASIC19.36■□□□□ 0.69
Trav9-4A0A0B4J1K2 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav9-4A0A0B4J1K2 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trav9-4A0A0B4J1K2 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.33■□□□□ 0.68
Trav9-4A0A0B4J1K2 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC19.32■□□□□ 0.68
Trav9-4A0A0B4J1K2 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav9-4A0A0B4J1K2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav9-4A0A0B4J1K2 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Trav9-4A0A0B4J1K2 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav9-4A0A0B4J1K2 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.29■□□□□ 0.68
Trav9-4A0A0B4J1K2 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav9-4A0A0B4J1K2 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav9-4A0A0B4J1K2 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.27■□□□□ 0.68
Trav9-4A0A0B4J1K2 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trav9-4A0A0B4J1K2 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.27■□□□□ 0.68
Trav9-4A0A0B4J1K2 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trav9-4A0A0B4J1K2 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav9-4A0A0B4J1K2 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav9-4A0A0B4J1K2 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav9-4A0A0B4J1K2 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav9-4A0A0B4J1K2 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trav9-4A0A0B4J1K2 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Trav9-4A0A0B4J1K2 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Trav9-4A0A0B4J1K2 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trav9-4A0A0B4J1K2 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trav9-4A0A0B4J1K2 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav9-4A0A0B4J1K2 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trav9-4A0A0B4J1K2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Trav9-4A0A0B4J1K2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav9-4A0A0B4J1K2 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav9-4A0A0B4J1K2 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav9-4A0A0B4J1K2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav9-4A0A0B4J1K2 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav9-4A0A0B4J1K2 Gm16148-201ENSMUST00000119653 893 ntBASIC19.16■□□□□ 0.66
Trav9-4A0A0B4J1K2 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav9-4A0A0B4J1K2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trav9-4A0A0B4J1K2 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Trav9-4A0A0B4J1K2 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.14■□□□□ 0.65
Trav9-4A0A0B4J1K2 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav9-4A0A0B4J1K2 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trav9-4A0A0B4J1K2 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
Trav9-4A0A0B4J1K2 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trav9-4A0A0B4J1K2 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav9-4A0A0B4J1K2 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav9-4A0A0B4J1K2 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav9-4A0A0B4J1K2 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav9-4A0A0B4J1K2 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav9-4A0A0B4J1K2 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.08■□□□□ 0.64
Trav9-4A0A0B4J1K2 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trav9-4A0A0B4J1K2 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav9-4A0A0B4J1K2 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav9-4A0A0B4J1K2 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav9-4A0A0B4J1K2 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav9-4A0A0B4J1K2 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
Trav9-4A0A0B4J1K2 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav9-4A0A0B4J1K2 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav9-4A0A0B4J1K2 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav9-4A0A0B4J1K2 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Trav9-4A0A0B4J1K2 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.04■□□□□ 0.64
Trav9-4A0A0B4J1K2 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
Trav9-4A0A0B4J1K2 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav9-4A0A0B4J1K2 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav9-4A0A0B4J1K2 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Trav9-4A0A0B4J1K2 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms