Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trbv5A0A0B4J1G9 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trbv5A0A0B4J1G9 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trbv5A0A0B4J1G9 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trbv5A0A0B4J1G9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trbv5A0A0B4J1G9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20.8■□□□□ 0.92
Trbv5A0A0B4J1G9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
Trbv5A0A0B4J1G9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trbv5A0A0B4J1G9 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trbv5A0A0B4J1G9 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.77■□□□□ 0.91
Trbv5A0A0B4J1G9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trbv5A0A0B4J1G9 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trbv5A0A0B4J1G9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trbv5A0A0B4J1G9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trbv5A0A0B4J1G9 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trbv5A0A0B4J1G9 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.74■□□□□ 0.91
Trbv5A0A0B4J1G9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trbv5A0A0B4J1G9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trbv5A0A0B4J1G9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.72■□□□□ 0.91
Trbv5A0A0B4J1G9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trbv5A0A0B4J1G9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trbv5A0A0B4J1G9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.7■□□□□ 0.9
Trbv5A0A0B4J1G9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trbv5A0A0B4J1G9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trbv5A0A0B4J1G9 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trbv5A0A0B4J1G9 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trbv5A0A0B4J1G9 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trbv5A0A0B4J1G9 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trbv5A0A0B4J1G9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Trbv5A0A0B4J1G9 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trbv5A0A0B4J1G9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Trbv5A0A0B4J1G9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv5A0A0B4J1G9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv5A0A0B4J1G9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.62■□□□□ 0.89
Trbv5A0A0B4J1G9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trbv5A0A0B4J1G9 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trbv5A0A0B4J1G9 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trbv5A0A0B4J1G9 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.58■□□□□ 0.88
Trbv5A0A0B4J1G9 Amer2-203ENSMUST00000225247 2662 ntBASIC20.57■□□□□ 0.88
Trbv5A0A0B4J1G9 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trbv5A0A0B4J1G9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trbv5A0A0B4J1G9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trbv5A0A0B4J1G9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trbv5A0A0B4J1G9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Trbv5A0A0B4J1G9 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trbv5A0A0B4J1G9 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trbv5A0A0B4J1G9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trbv5A0A0B4J1G9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trbv5A0A0B4J1G9 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trbv5A0A0B4J1G9 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
Trbv5A0A0B4J1G9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trbv5A0A0B4J1G9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trbv5A0A0B4J1G9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trbv5A0A0B4J1G9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trbv5A0A0B4J1G9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Trbv5A0A0B4J1G9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
Trbv5A0A0B4J1G9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trbv5A0A0B4J1G9 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Trbv5A0A0B4J1G9 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trbv5A0A0B4J1G9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trbv5A0A0B4J1G9 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trbv5A0A0B4J1G9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.44■□□□□ 0.86
Trbv5A0A0B4J1G9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.44■□□□□ 0.86
Trbv5A0A0B4J1G9 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trbv5A0A0B4J1G9 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Trbv5A0A0B4J1G9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trbv5A0A0B4J1G9 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Trbv5A0A0B4J1G9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Trbv5A0A0B4J1G9 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Trbv5A0A0B4J1G9 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.39■□□□□ 0.85
Trbv5A0A0B4J1G9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Trbv5A0A0B4J1G9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trbv5A0A0B4J1G9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trbv5A0A0B4J1G9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trbv5A0A0B4J1G9 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.35■□□□□ 0.85
Trbv5A0A0B4J1G9 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trbv5A0A0B4J1G9 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trbv5A0A0B4J1G9 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trbv5A0A0B4J1G9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.32■□□□□ 0.84
Trbv5A0A0B4J1G9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trbv5A0A0B4J1G9 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trbv5A0A0B4J1G9 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trbv5A0A0B4J1G9 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trbv5A0A0B4J1G9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trbv5A0A0B4J1G9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC20.3■□□□□ 0.84
Trbv5A0A0B4J1G9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Trbv5A0A0B4J1G9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Trbv5A0A0B4J1G9 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv5A0A0B4J1G9 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv5A0A0B4J1G9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv5A0A0B4J1G9 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv5A0A0B4J1G9 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trbv5A0A0B4J1G9 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv5A0A0B4J1G9 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv5A0A0B4J1G9 Gm25238-201ENSMUST00000174914 89 ntBASIC20.26■□□□□ 0.83
Trbv5A0A0B4J1G9 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trbv5A0A0B4J1G9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trbv5A0A0B4J1G9 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.26■□□□□ 0.83
Trbv5A0A0B4J1G9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trbv5A0A0B4J1G9 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms