Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Trav6d-5A0A075B6B9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6d-5A0A075B6B9 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6d-5A0A075B6B9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6d-5A0A075B6B9 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6d-5A0A075B6B9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav6d-5A0A075B6B9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6d-5A0A075B6B9 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6d-5A0A075B6B9 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trav6d-5A0A075B6B9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav6d-5A0A075B6B9 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav6d-5A0A075B6B9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav6d-5A0A075B6B9 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav6d-5A0A075B6B9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Trav6d-5A0A075B6B9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.03■□□□□ 0.96
Trav6d-5A0A075B6B9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav6d-5A0A075B6B9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Trav6d-5A0A075B6B9 Gm43445-201ENSMUST00000198564 2091 ntBASIC21.01■□□□□ 0.95
Trav6d-5A0A075B6B9 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trav6d-5A0A075B6B9 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav6d-5A0A075B6B9 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav6d-5A0A075B6B9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav6d-5A0A075B6B9 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav6d-5A0A075B6B9 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav6d-5A0A075B6B9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.96■□□□□ 0.95
Trav6d-5A0A075B6B9 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.95
Trav6d-5A0A075B6B9 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Trav6d-5A0A075B6B9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav6d-5A0A075B6B9 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav6d-5A0A075B6B9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav6d-5A0A075B6B9 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6d-5A0A075B6B9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6d-5A0A075B6B9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
Trav6d-5A0A075B6B9 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6d-5A0A075B6B9 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trav6d-5A0A075B6B9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.92■□□□□ 0.94
Trav6d-5A0A075B6B9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Trav6d-5A0A075B6B9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trav6d-5A0A075B6B9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav6d-5A0A075B6B9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.9■□□□□ 0.94
Trav6d-5A0A075B6B9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trav6d-5A0A075B6B9 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trav6d-5A0A075B6B9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav6d-5A0A075B6B9 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav6d-5A0A075B6B9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav6d-5A0A075B6B9 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.85■□□□□ 0.93
Trav6d-5A0A075B6B9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trav6d-5A0A075B6B9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.84■□□□□ 0.93
Trav6d-5A0A075B6B9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
Trav6d-5A0A075B6B9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav6d-5A0A075B6B9 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trav6d-5A0A075B6B9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Trav6d-5A0A075B6B9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav6d-5A0A075B6B9 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav6d-5A0A075B6B9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
Trav6d-5A0A075B6B9 Rab21-202ENSMUST00000218831 843 ntBASIC20.81■□□□□ 0.92
Trav6d-5A0A075B6B9 Mipep-204ENSMUST00000225043 1548 ntBASIC20.81■□□□□ 0.92
Trav6d-5A0A075B6B9 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trav6d-5A0A075B6B9 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav6d-5A0A075B6B9 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trav6d-5A0A075B6B9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trav6d-5A0A075B6B9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trav6d-5A0A075B6B9 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trav6d-5A0A075B6B9 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trav6d-5A0A075B6B9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trav6d-5A0A075B6B9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC20.73■□□□□ 0.91
Trav6d-5A0A075B6B9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Trav6d-5A0A075B6B9 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trav6d-5A0A075B6B9 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trav6d-5A0A075B6B9 Amer2-203ENSMUST00000225247 2662 ntBASIC20.68■□□□□ 0.9
Trav6d-5A0A075B6B9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trav6d-5A0A075B6B9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Trav6d-5A0A075B6B9 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Trav6d-5A0A075B6B9 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Trav6d-5A0A075B6B9 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.65■□□□□ 0.9
Trav6d-5A0A075B6B9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Trav6d-5A0A075B6B9 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.64■□□□□ 0.89
Trav6d-5A0A075B6B9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav6d-5A0A075B6B9 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.63■□□□□ 0.89
Trav6d-5A0A075B6B9 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Trav6d-5A0A075B6B9 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6d-5A0A075B6B9 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6d-5A0A075B6B9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20.6■□□□□ 0.89
Trav6d-5A0A075B6B9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav6d-5A0A075B6B9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav6d-5A0A075B6B9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trav6d-5A0A075B6B9 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.57■□□□□ 0.88
Trav6d-5A0A075B6B9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav6d-5A0A075B6B9 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Trav6d-5A0A075B6B9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav6d-5A0A075B6B9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav6d-5A0A075B6B9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trav6d-5A0A075B6B9 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Trav6d-5A0A075B6B9 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.55■□□□□ 0.88
Trav6d-5A0A075B6B9 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6d-5A0A075B6B9 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6d-5A0A075B6B9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trav6d-5A0A075B6B9 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6d-5A0A075B6B9 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.5■□□□□ 0.87
Trav6d-5A0A075B6B9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms