Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav16d-dv11A0A075B617 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Trav16d-dv11A0A075B617 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav16d-dv11A0A075B617 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC18.95■□□□□ 0.62
Trav16d-dv11A0A075B617 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC18.94■□□□□ 0.62
Trav16d-dv11A0A075B617 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav16d-dv11A0A075B617 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav16d-dv11A0A075B617 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav16d-dv11A0A075B617 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav16d-dv11A0A075B617 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav16d-dv11A0A075B617 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trav16d-dv11A0A075B617 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav16d-dv11A0A075B617 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav16d-dv11A0A075B617 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav16d-dv11A0A075B617 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav16d-dv11A0A075B617 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC18.85■□□□□ 0.61
Trav16d-dv11A0A075B617 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav16d-dv11A0A075B617 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav16d-dv11A0A075B617 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trav16d-dv11A0A075B617 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav16d-dv11A0A075B617 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav16d-dv11A0A075B617 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav16d-dv11A0A075B617 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav16d-dv11A0A075B617 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav16d-dv11A0A075B617 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav16d-dv11A0A075B617 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav16d-dv11A0A075B617 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav16d-dv11A0A075B617 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav16d-dv11A0A075B617 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC18.75■□□□□ 0.59
Trav16d-dv11A0A075B617 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav16d-dv11A0A075B617 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.74■□□□□ 0.59
Trav16d-dv11A0A075B617 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
Trav16d-dv11A0A075B617 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav16d-dv11A0A075B617 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trav16d-dv11A0A075B617 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav16d-dv11A0A075B617 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav16d-dv11A0A075B617 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav16d-dv11A0A075B617 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Trav16d-dv11A0A075B617 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav16d-dv11A0A075B617 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC18.71■□□□□ 0.59
Trav16d-dv11A0A075B617 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav16d-dv11A0A075B617 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav16d-dv11A0A075B617 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav16d-dv11A0A075B617 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Trav16d-dv11A0A075B617 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav16d-dv11A0A075B617 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.69■□□□□ 0.58
Trav16d-dv11A0A075B617 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav16d-dv11A0A075B617 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav16d-dv11A0A075B617 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav16d-dv11A0A075B617 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav16d-dv11A0A075B617 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC18.65■□□□□ 0.58
Trav16d-dv11A0A075B617 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav16d-dv11A0A075B617 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav16d-dv11A0A075B617 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav16d-dv11A0A075B617 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trav16d-dv11A0A075B617 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav16d-dv11A0A075B617 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav16d-dv11A0A075B617 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav16d-dv11A0A075B617 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav16d-dv11A0A075B617 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trav16d-dv11A0A075B617 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav16d-dv11A0A075B617 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav16d-dv11A0A075B617 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav16d-dv11A0A075B617 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trav16d-dv11A0A075B617 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav16d-dv11A0A075B617 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav16d-dv11A0A075B617 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav16d-dv11A0A075B617 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trav16d-dv11A0A075B617 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav16d-dv11A0A075B617 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav16d-dv11A0A075B617 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trav16d-dv11A0A075B617 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav16d-dv11A0A075B617 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18.53■□□□□ 0.56
Trav16d-dv11A0A075B617 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav16d-dv11A0A075B617 Amer2-203ENSMUST00000225247 2662 ntBASIC18.52■□□□□ 0.56
Trav16d-dv11A0A075B617 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav16d-dv11A0A075B617 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav16d-dv11A0A075B617 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav16d-dv11A0A075B617 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav16d-dv11A0A075B617 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC18.49■□□□□ 0.55
Trav16d-dv11A0A075B617 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav16d-dv11A0A075B617 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
Trav16d-dv11A0A075B617 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav16d-dv11A0A075B617 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav16d-dv11A0A075B617 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Trav16d-dv11A0A075B617 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav16d-dv11A0A075B617 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav16d-dv11A0A075B617 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav16d-dv11A0A075B617 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trav16d-dv11A0A075B617 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav16d-dv11A0A075B617 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav16d-dv11A0A075B617 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav16d-dv11A0A075B617 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav16d-dv11A0A075B617 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trav16d-dv11A0A075B617 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trav16d-dv11A0A075B617 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav16d-dv11A0A075B617 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav16d-dv11A0A075B617 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav16d-dv11A0A075B617 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav16d-dv11A0A075B617 Fezf2-202ENSMUST00000224023 1917 ntBASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms