Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.88■□□□□ 0.93
Nkx2-4Q9EQM3 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Nkx2-4Q9EQM3 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx2-4Q9EQM3 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Gm22325-201ENSMUST00000158904 308 ntBASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Gm20760-201ENSMUST00000179197 648 ntBASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Gm4968-201ENSMUST00000071458 858 ntBASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx2-4Q9EQM3 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nkx2-4Q9EQM3 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nkx2-4Q9EQM3 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.84■□□□□ 0.93
Nkx2-4Q9EQM3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.84■□□□□ 0.93
Nkx2-4Q9EQM3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nkx2-4Q9EQM3 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nkx2-4Q9EQM3 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Nkx2-4Q9EQM3 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.83■□□□□ 0.93
Nkx2-4Q9EQM3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Nkx2-4Q9EQM3 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Nkx2-4Q9EQM3 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Nkx2-4Q9EQM3 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Nkx2-4Q9EQM3 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Mir7071-201ENSMUST00000184847 69 ntBASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx2-4Q9EQM3 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx2-4Q9EQM3 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx2-4Q9EQM3 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 Gm8520-201ENSMUST00000186517 868 ntBASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx2-4Q9EQM3 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx2-4Q9EQM3 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx2-4Q9EQM3 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx2-4Q9EQM3 Gm12527-201ENSMUST00000117967 564 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms