Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf3Q8C120 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf3Q8C120 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf3Q8C120 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf3Q8C120 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf3Q8C120 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
Sh3rf3Q8C120 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sh3rf3Q8C120 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf3Q8C120 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sh3rf3Q8C120 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.94■□□□□ 0.94
Sh3rf3Q8C120 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Sh3rf3Q8C120 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf3Q8C120 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf3Q8C120 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Sh3rf3Q8C120 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf3Q8C120 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Sh3rf3Q8C120 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf3Q8C120 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf3Q8C120 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf3Q8C120 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf3Q8C120 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Sh3rf3Q8C120 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Sh3rf3Q8C120 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.94
Sh3rf3Q8C120 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Sh3rf3Q8C120 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf3Q8C120 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf3Q8C120 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf3Q8C120 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms