Protein–RNA interactions for Protein: A0A075B6B3

Trav6d-3, T cell receptor alpha variable 6D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-3A0A075B6B3 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC16.17■□□□□ 0.18
Trav6d-3A0A075B6B3 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Trav6d-3A0A075B6B3 Gm7143-201ENSMUST00000222811 859 ntBASIC16.17■□□□□ 0.18
Trav6d-3A0A075B6B3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6d-3A0A075B6B3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6d-3A0A075B6B3 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6d-3A0A075B6B3 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav6d-3A0A075B6B3 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav6d-3A0A075B6B3 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Trav6d-3A0A075B6B3 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav6d-3A0A075B6B3 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6d-3A0A075B6B3 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6d-3A0A075B6B3 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6d-3A0A075B6B3 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav6d-3A0A075B6B3 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav6d-3A0A075B6B3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Trav6d-3A0A075B6B3 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav6d-3A0A075B6B3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Gm40881-201ENSMUST00000223397 166 ntBASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav6d-3A0A075B6B3 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Trav6d-3A0A075B6B3 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav6d-3A0A075B6B3 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6d-3A0A075B6B3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6d-3A0A075B6B3 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6d-3A0A075B6B3 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6d-3A0A075B6B3 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6d-3A0A075B6B3 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC16.09■□□□□ 0.17
Trav6d-3A0A075B6B3 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC16.09■□□□□ 0.17
Trav6d-3A0A075B6B3 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms