Protein–RNA interactions for Protein: Q3UHX8

Nkx6-3, Homeobox protein Nkx-6.3, mousemouse

Predictions only

Length 262 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-3Q3UHX8 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx6-3Q3UHX8 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx6-3Q3UHX8 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx6-3Q3UHX8 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx6-3Q3UHX8 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx6-3Q3UHX8 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx6-3Q3UHX8 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx6-3Q3UHX8 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC19.18■□□□□ 0.66
Nkx6-3Q3UHX8 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx6-3Q3UHX8 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.18■□□□□ 0.66
Nkx6-3Q3UHX8 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.18■□□□□ 0.66
Nkx6-3Q3UHX8 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Nkx6-3Q3UHX8 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx6-3Q3UHX8 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx6-3Q3UHX8 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx6-3Q3UHX8 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nkx6-3Q3UHX8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Nkx6-3Q3UHX8 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Nkx6-3Q3UHX8 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx6-3Q3UHX8 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx6-3Q3UHX8 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx6-3Q3UHX8 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx6-3Q3UHX8 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.14■□□□□ 0.65
Nkx6-3Q3UHX8 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Nkx6-3Q3UHX8 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Nkx6-3Q3UHX8 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx6-3Q3UHX8 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Gm27045-201ENSMUST00000182145 1402 ntBASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Mir6236-201ENSMUST00000184437 123 ntBASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx6-3Q3UHX8 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx6-3Q3UHX8 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC19.1■□□□□ 0.65
Nkx6-3Q3UHX8 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Mir7075-201ENSMUST00000184187 82 ntBASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Nkx6-3Q3UHX8 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms