Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv5A0A0B4J1G9 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv5A0A0B4J1G9 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv5A0A0B4J1G9 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Trbv5A0A0B4J1G9 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv5A0A0B4J1G9 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv5A0A0B4J1G9 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv5A0A0B4J1G9 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv5A0A0B4J1G9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv5A0A0B4J1G9 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 Nsd1-206ENSMUST00000224918 1001 ntBASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv5A0A0B4J1G9 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Gm11599-201ENSMUST00000118720 878 ntBASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv5A0A0B4J1G9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trbv5A0A0B4J1G9 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trbv5A0A0B4J1G9 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trbv5A0A0B4J1G9 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 AC167019.3-201ENSMUST00000228225 1266 ntBASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trbv5A0A0B4J1G9 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms