Protein–RNA interactions for Protein: A0A075B6B3

Trav6d-3, T cell receptor alpha variable 6D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-3A0A075B6B3 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav6d-3A0A075B6B3 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav6d-3A0A075B6B3 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trav6d-3A0A075B6B3 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav6d-3A0A075B6B3 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trav6d-3A0A075B6B3 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav6d-3A0A075B6B3 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav6d-3A0A075B6B3 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trav6d-3A0A075B6B3 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav6d-3A0A075B6B3 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trav6d-3A0A075B6B3 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trav6d-3A0A075B6B3 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC16.25■□□□□ 0.19
Trav6d-3A0A075B6B3 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav6d-3A0A075B6B3 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav6d-3A0A075B6B3 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav6d-3A0A075B6B3 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Gm10232-201ENSMUST00000089221 720 ntBASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav6d-3A0A075B6B3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav6d-3A0A075B6B3 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav6d-3A0A075B6B3 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trav6d-3A0A075B6B3 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trav6d-3A0A075B6B3 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav6d-3A0A075B6B3 AC166356.1-201ENSMUST00000228236 1426 ntBASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav6d-3A0A075B6B3 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6d-3A0A075B6B3 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6d-3A0A075B6B3 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC16.18■□□□□ 0.18
Trav6d-3A0A075B6B3 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6d-3A0A075B6B3 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6d-3A0A075B6B3 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav6d-3A0A075B6B3 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms