Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Gm37592-201ENSMUST00000192741 373 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim35Q8C006 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
Trim35Q8C006 AC154248.2-201ENSMUST00000221964 659 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim35Q8C006 AC154532.1-201ENSMUST00000227860 965 ntBASIC20.53■□□□□ 0.88
Trim35Q8C006 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim35Q8C006 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.53■□□□□ 0.88
Trim35Q8C006 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim35Q8C006 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim35Q8C006 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim35Q8C006 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim35Q8C006 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim35Q8C006 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim35Q8C006 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim35Q8C006 Prl8a1-201ENSMUST00000006664 864 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim35Q8C006 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim35Q8C006 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.52■□□□□ 0.88
Trim35Q8C006 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim35Q8C006 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.52■□□□□ 0.88
Trim35Q8C006 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.87
Trim35Q8C006 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim35Q8C006 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim35Q8C006 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim35Q8C006 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim35Q8C006 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim35Q8C006 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim35Q8C006 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Trim35Q8C006 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.51■□□□□ 0.87
Trim35Q8C006 Gm7417-201ENSMUST00000192950 473 ntBASIC20.51■□□□□ 0.87
Trim35Q8C006 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim35Q8C006 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim35Q8C006 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
Trim35Q8C006 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim35Q8C006 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim35Q8C006 Gm14363-201ENSMUST00000122304 409 ntBASIC20.5■□□□□ 0.87
Trim35Q8C006 Iqck-206ENSMUST00000208658 2891 ntBASIC20.5■□□□□ 0.87
Trim35Q8C006 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim35Q8C006 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim35Q8C006 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim35Q8C006 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Trim35Q8C006 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim35Q8C006 Gm43974-201ENSMUST00000205080 684 ntBASIC20.49■□□□□ 0.87
Trim35Q8C006 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim35Q8C006 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim35Q8C006 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim35Q8C006 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Trim35Q8C006 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim35Q8C006 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim35Q8C006 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim35Q8C006 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim35Q8C006 Gm13263-201ENSMUST00000121271 838 ntBASIC20.48■□□□□ 0.87
Trim35Q8C006 Gm28745-201ENSMUST00000190069 305 ntBASIC20.48■□□□□ 0.87
Trim35Q8C006 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.48■□□□□ 0.87
Trim35Q8C006 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Trim35Q8C006 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim35Q8C006 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Trim35Q8C006 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
Trim35Q8C006 Gm22993-201ENSMUST00000175423 254 ntBASIC20.47■□□□□ 0.87
Trim35Q8C006 Pid1-205ENSMUST00000176720 450 ntTSL 5 BASIC20.47■□□□□ 0.87
Trim35Q8C006 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.47■□□□□ 0.87
Trim35Q8C006 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim35Q8C006 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim35Q8C006 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim35Q8C006 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim35Q8C006 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim35Q8C006 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim35Q8C006 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim35Q8C006 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.46■□□□□ 0.87
Trim35Q8C006 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim35Q8C006 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC20.46■□□□□ 0.87
Trim35Q8C006 Gm44953-201ENSMUST00000208745 1286 ntBASIC20.46■□□□□ 0.87
Trim35Q8C006 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.46■□□□□ 0.87
Trim35Q8C006 Olfr128-201ENSMUST00000080231 1050 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Trim35Q8C006 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim35Q8C006 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim35Q8C006 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Trim35Q8C006 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim35Q8C006 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.45■□□□□ 0.86
Trim35Q8C006 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.45■□□□□ 0.86
Trim35Q8C006 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim35Q8C006 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim35Q8C006 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.45■□□□□ 0.86
Trim35Q8C006 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim35Q8C006 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim35Q8C006 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim35Q8C006 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim35Q8C006 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Trim35Q8C006 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim35Q8C006 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim35Q8C006 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim35Q8C006 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim35Q8C006 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim35Q8C006 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
Trim35Q8C006 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms