Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trbv1A0A0B4J1G7 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Gm5067-201ENSMUST00000170449 1009 ntBASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Gm43592-201ENSMUST00000196922 1165 ntBASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
Trbv1A0A0B4J1G7 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trbv1A0A0B4J1G7 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trbv1A0A0B4J1G7 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trbv1A0A0B4J1G7 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Gm5131-201ENSMUST00000212776 1238 ntBASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trbv1A0A0B4J1G7 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trbv1A0A0B4J1G7 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trbv1A0A0B4J1G7 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trbv1A0A0B4J1G7 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trbv1A0A0B4J1G7 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms