Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.92■□□□□ 0.94
Vps28Q9D1C8 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Vps28Q9D1C8 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Vps28Q9D1C8 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Vps28Q9D1C8 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Vps28Q9D1C8 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.9■□□□□ 0.94
Vps28Q9D1C8 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.9■□□□□ 0.94
Vps28Q9D1C8 Golgb1-201ENSMUST00000023534 498 ntBASIC20.9■□□□□ 0.94
Vps28Q9D1C8 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
Vps28Q9D1C8 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Vps28Q9D1C8 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Vps28Q9D1C8 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Vps28Q9D1C8 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Vps28Q9D1C8 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Vps28Q9D1C8 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.89■□□□□ 0.93
Vps28Q9D1C8 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Vps28Q9D1C8 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Notumos-201ENSMUST00000151998 2659 ntBASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Gm7143-201ENSMUST00000222811 859 ntBASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps28Q9D1C8 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps28Q9D1C8 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps28Q9D1C8 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Vps28Q9D1C8 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps28Q9D1C8 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps28Q9D1C8 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps28Q9D1C8 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps28Q9D1C8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps28Q9D1C8 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Gm21956-201ENSMUST00000179946 522 ntBASIC20.84■□□□□ 0.93
Vps28Q9D1C8 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
Vps28Q9D1C8 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.83■□□□□ 0.93
Vps28Q9D1C8 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps28Q9D1C8 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.83■□□□□ 0.92
Vps28Q9D1C8 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps28Q9D1C8 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps28Q9D1C8 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps28Q9D1C8 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps28Q9D1C8 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Vps28Q9D1C8 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms