Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rtl3Q6P1Y1 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Gm7143-201ENSMUST00000222811 859 ntBASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Rtl3Q6P1Y1 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rtl3Q6P1Y1 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rtl3Q6P1Y1 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.08■□□□□ 0.97
Rtl3Q6P1Y1 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rtl3Q6P1Y1 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.08■□□□□ 0.97
Rtl3Q6P1Y1 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Rtl3Q6P1Y1 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Rtl3Q6P1Y1 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rtl3Q6P1Y1 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Rtl3Q6P1Y1 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Rtl3Q6P1Y1 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.06■□□□□ 0.96
Rtl3Q6P1Y1 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rtl3Q6P1Y1 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rtl3Q6P1Y1 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Rtl3Q6P1Y1 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rtl3Q6P1Y1 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Golgb1-201ENSMUST00000023534 498 ntBASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rtl3Q6P1Y1 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rtl3Q6P1Y1 Gm12821-201ENSMUST00000120022 600 ntBASIC21.02■□□□□ 0.96
Rtl3Q6P1Y1 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Rtl3Q6P1Y1 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rtl3Q6P1Y1 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Rtl3Q6P1Y1 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Rtl3Q6P1Y1 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Rtl3Q6P1Y1 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rtl3Q6P1Y1 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rtl3Q6P1Y1 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms