Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Sh3rf1Q69ZI1 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Sh3rf1Q69ZI1 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Sh3rf1Q69ZI1 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sh3rf1Q69ZI1 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf1Q69ZI1 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf1Q69ZI1 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf1Q69ZI1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Sh3rf1Q69ZI1 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Sh3rf1Q69ZI1 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Sh3rf1Q69ZI1 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sh3rf1Q69ZI1 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sh3rf1Q69ZI1 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf1Q69ZI1 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Sh3rf1Q69ZI1 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf1Q69ZI1 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sh3rf1Q69ZI1 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sh3rf1Q69ZI1 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf1Q69ZI1 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf1Q69ZI1 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf1Q69ZI1 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf1Q69ZI1 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sh3rf1Q69ZI1 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sh3rf1Q69ZI1 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Sh3rf1Q69ZI1 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sh3rf1Q69ZI1 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sh3rf1Q69ZI1 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.57■□□□□ 0.88
Sh3rf1Q69ZI1 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sh3rf1Q69ZI1 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sh3rf1Q69ZI1 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.54■□□□□ 0.88
Sh3rf1Q69ZI1 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms