Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv5A0A0B4J1G9 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC16.41■□□□□ 0.22
Trbv5A0A0B4J1G9 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv5A0A0B4J1G9 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv5A0A0B4J1G9 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv5A0A0B4J1G9 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv5A0A0B4J1G9 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trbv5A0A0B4J1G9 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 AC117769.4-201ENSMUST00000225679 685 ntBASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
Trbv5A0A0B4J1G9 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv5A0A0B4J1G9 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Gm44428-201ENSMUST00000204474 874 ntBASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trbv5A0A0B4J1G9 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv5A0A0B4J1G9 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv5A0A0B4J1G9 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv5A0A0B4J1G9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Hsf1-204ENSMUST00000226872 2104 ntBASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trbv5A0A0B4J1G9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trbv5A0A0B4J1G9 AC122428.2-201ENSMUST00000216321 1832 ntBASIC16.33■□□□□ 0.21
Trbv5A0A0B4J1G9 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms