Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Cd40lgP27548 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Cd40lgP27548 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Cd40lgP27548 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.8■□□□□ 0.6
Cd40lgP27548 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Cd40lgP27548 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.8■□□□□ 0.6
Cd40lgP27548 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cd40lgP27548 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.8■□□□□ 0.6
Cd40lgP27548 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cd40lgP27548 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC18.8■□□□□ 0.6
Cd40lgP27548 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.79■□□□□ 0.6
Cd40lgP27548 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Cd40lgP27548 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Cd40lgP27548 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 AC158990.1-201ENSMUST00000221450 2016 ntBASIC18.79■□□□□ 0.6
Cd40lgP27548 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cd40lgP27548 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.78■□□□□ 0.6
Cd40lgP27548 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cd40lgP27548 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.78■□□□□ 0.6
Cd40lgP27548 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cd40lgP27548 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Cd40lgP27548 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.77■□□□□ 0.6
Cd40lgP27548 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.77■□□□□ 0.6
Cd40lgP27548 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cd40lgP27548 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cd40lgP27548 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC18.77■□□□□ 0.6
Cd40lgP27548 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cd40lgP27548 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cd40lgP27548 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Cd40lgP27548 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC18.77■□□□□ 0.59
Cd40lgP27548 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.76■□□□□ 0.59
Cd40lgP27548 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.76■□□□□ 0.59
Cd40lgP27548 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cd40lgP27548 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.76■□□□□ 0.59
Cd40lgP27548 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cd40lgP27548 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.75■□□□□ 0.59
Cd40lgP27548 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.75■□□□□ 0.59
Cd40lgP27548 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC18.75■□□□□ 0.59
Cd40lgP27548 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Cd40lgP27548 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cd40lgP27548 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.74■□□□□ 0.59
Cd40lgP27548 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.74■□□□□ 0.59
Cd40lgP27548 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.74■□□□□ 0.59
Cd40lgP27548 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Cd40lgP27548 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Cd40lgP27548 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cd40lgP27548 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.73■□□□□ 0.59
Cd40lgP27548 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cd40lgP27548 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cd40lgP27548 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Cd40lgP27548 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 58.6 ms