Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Use1Q9CQ56 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Use1Q9CQ56 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Use1Q9CQ56 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Use1Q9CQ56 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Use1Q9CQ56 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Use1Q9CQ56 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Use1Q9CQ56 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Use1Q9CQ56 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Use1Q9CQ56 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Use1Q9CQ56 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Use1Q9CQ56 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Use1Q9CQ56 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.44■□□□□ 0.7
Use1Q9CQ56 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Use1Q9CQ56 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Use1Q9CQ56 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Use1Q9CQ56 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
Use1Q9CQ56 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Use1Q9CQ56 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Use1Q9CQ56 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.42■□□□□ 0.7
Use1Q9CQ56 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Use1Q9CQ56 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
Use1Q9CQ56 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Use1Q9CQ56 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Use1Q9CQ56 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Use1Q9CQ56 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC19.41■□□□□ 0.7
Use1Q9CQ56 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Use1Q9CQ56 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Use1Q9CQ56 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.4■□□□□ 0.7
Use1Q9CQ56 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Use1Q9CQ56 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.4■□□□□ 0.7
Use1Q9CQ56 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.4■□□□□ 0.7
Use1Q9CQ56 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Use1Q9CQ56 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Use1Q9CQ56 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Use1Q9CQ56 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Use1Q9CQ56 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Use1Q9CQ56 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Use1Q9CQ56 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.38■□□□□ 0.69
Use1Q9CQ56 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Use1Q9CQ56 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Use1Q9CQ56 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Use1Q9CQ56 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Use1Q9CQ56 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Use1Q9CQ56 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Use1Q9CQ56 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Use1Q9CQ56 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms