Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Sh3rf1Q69ZI1 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Sh3rf1Q69ZI1 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Sh3rf1Q69ZI1 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sh3rf1Q69ZI1 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.84■□□□□ 0.93
Sh3rf1Q69ZI1 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Sh3rf1Q69ZI1 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Sh3rf1Q69ZI1 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Sh3rf1Q69ZI1 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.83■□□□□ 0.92
Sh3rf1Q69ZI1 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sh3rf1Q69ZI1 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sh3rf1Q69ZI1 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sh3rf1Q69ZI1 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sh3rf1Q69ZI1 Gm10232-201ENSMUST00000089221 720 ntBASIC20.81■□□□□ 0.92
Sh3rf1Q69ZI1 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sh3rf1Q69ZI1 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sh3rf1Q69ZI1 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sh3rf1Q69ZI1 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sh3rf1Q69ZI1 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Sh3rf1Q69ZI1 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sh3rf1Q69ZI1 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Sh3rf1Q69ZI1 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Sh3rf1Q69ZI1 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Sh3rf1Q69ZI1 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Sh3rf1Q69ZI1 Golph3-202ENSMUST00000226517 2359 ntBASIC20.77■□□□□ 0.91
Sh3rf1Q69ZI1 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Sh3rf1Q69ZI1 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sh3rf1Q69ZI1 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sh3rf1Q69ZI1 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Sh3rf1Q69ZI1 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sh3rf1Q69ZI1 Etf1-202ENSMUST00000180351 108 ntBASIC20.74■□□□□ 0.91
Sh3rf1Q69ZI1 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sh3rf1Q69ZI1 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Sh3rf1Q69ZI1 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sh3rf1Q69ZI1 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sh3rf1Q69ZI1 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms