Protein–RNA interactions for Protein: Q5M6W3

Clhc1, Clathrin heavy chain linker domain-containing protein 1, mousemouse

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clhc1Q5M6W3 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Clhc1Q5M6W3 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.83■□□□□ 0.77
Clhc1Q5M6W3 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Clhc1Q5M6W3 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Clhc1Q5M6W3 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Clhc1Q5M6W3 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Clhc1Q5M6W3 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clhc1Q5M6W3 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Clhc1Q5M6W3 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clhc1Q5M6W3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clhc1Q5M6W3 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Clhc1Q5M6W3 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clhc1Q5M6W3 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clhc1Q5M6W3 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clhc1Q5M6W3 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clhc1Q5M6W3 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Clhc1Q5M6W3 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clhc1Q5M6W3 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Clhc1Q5M6W3 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clhc1Q5M6W3 Cap2-205ENSMUST00000225824 1634 ntBASIC19.76■□□□□ 0.75
Clhc1Q5M6W3 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Clhc1Q5M6W3 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.76■□□□□ 0.75
Clhc1Q5M6W3 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clhc1Q5M6W3 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clhc1Q5M6W3 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clhc1Q5M6W3 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clhc1Q5M6W3 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Clhc1Q5M6W3 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clhc1Q5M6W3 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Clhc1Q5M6W3 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Clhc1Q5M6W3 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clhc1Q5M6W3 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clhc1Q5M6W3 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clhc1Q5M6W3 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clhc1Q5M6W3 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clhc1Q5M6W3 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 113 ms