Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.92■□□□□ 0.62
Cd40lgP27548 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cd40lgP27548 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cd40lgP27548 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cd40lgP27548 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cd40lgP27548 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.91■□□□□ 0.62
Cd40lgP27548 Gm40881-201ENSMUST00000223397 166 ntBASIC18.91■□□□□ 0.62
Cd40lgP27548 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Cd40lgP27548 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cd40lgP27548 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.9■□□□□ 0.62
Cd40lgP27548 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Cd40lgP27548 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cd40lgP27548 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Cd40lgP27548 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cd40lgP27548 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cd40lgP27548 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.89■□□□□ 0.61
Cd40lgP27548 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Cd40lgP27548 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.89■□□□□ 0.61
Cd40lgP27548 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.89■□□□□ 0.61
Cd40lgP27548 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cd40lgP27548 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cd40lgP27548 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cd40lgP27548 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
Cd40lgP27548 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cd40lgP27548 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cd40lgP27548 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
Cd40lgP27548 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Cd40lgP27548 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cd40lgP27548 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cd40lgP27548 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.88■□□□□ 0.61
Cd40lgP27548 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cd40lgP27548 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC18.88■□□□□ 0.61
Cd40lgP27548 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cd40lgP27548 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cd40lgP27548 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cd40lgP27548 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cd40lgP27548 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cd40lgP27548 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Cd40lgP27548 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cd40lgP27548 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cd40lgP27548 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cd40lgP27548 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cd40lgP27548 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Cd40lgP27548 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cd40lgP27548 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.86■□□□□ 0.61
Cd40lgP27548 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.86■□□□□ 0.61
Cd40lgP27548 AC115037.1-201ENSMUST00000223391 2173 ntBASIC18.86■□□□□ 0.61
Cd40lgP27548 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cd40lgP27548 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Cd40lgP27548 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Cd40lgP27548 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC18.84■□□□□ 0.61
Cd40lgP27548 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cd40lgP27548 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cd40lgP27548 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cd40lgP27548 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cd40lgP27548 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Cd40lgP27548 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cd40lgP27548 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.83■□□□□ 0.6
Cd40lgP27548 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cd40lgP27548 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Cd40lgP27548 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Cd40lgP27548 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cd40lgP27548 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cd40lgP27548 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms