Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Gm21956-201ENSMUST00000179946 522 ntBASIC19.02■□□□□ 0.64
Scn2aA0A0J9YTW6 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
Scn2aA0A0J9YTW6 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.02■□□□□ 0.64
Scn2aA0A0J9YTW6 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn2aA0A0J9YTW6 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn2aA0A0J9YTW6 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn2aA0A0J9YTW6 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn2aA0A0J9YTW6 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
Scn2aA0A0J9YTW6 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn2aA0A0J9YTW6 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19■□□□□ 0.63
Scn2aA0A0J9YTW6 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn2aA0A0J9YTW6 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn2aA0A0J9YTW6 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.99■□□□□ 0.63
Scn2aA0A0J9YTW6 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn2aA0A0J9YTW6 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn2aA0A0J9YTW6 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.99■□□□□ 0.63
Scn2aA0A0J9YTW6 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn2aA0A0J9YTW6 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn2aA0A0J9YTW6 Gm9847-201ENSMUST00000052528 599 ntBASIC18.98■□□□□ 0.63
Scn2aA0A0J9YTW6 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Scn2aA0A0J9YTW6 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn2aA0A0J9YTW6 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.98■□□□□ 0.63
Scn2aA0A0J9YTW6 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.98■□□□□ 0.63
Scn2aA0A0J9YTW6 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Scn2aA0A0J9YTW6 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Scn2aA0A0J9YTW6 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn2aA0A0J9YTW6 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn2aA0A0J9YTW6 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn2aA0A0J9YTW6 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn2aA0A0J9YTW6 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Scn2aA0A0J9YTW6 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Scn2aA0A0J9YTW6 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn2aA0A0J9YTW6 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn2aA0A0J9YTW6 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.94■□□□□ 0.62
Scn2aA0A0J9YTW6 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn2aA0A0J9YTW6 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn2aA0A0J9YTW6 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC18.94■□□□□ 0.62
Scn2aA0A0J9YTW6 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn2aA0A0J9YTW6 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn2aA0A0J9YTW6 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.92■□□□□ 0.62
Scn2aA0A0J9YTW6 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.92■□□□□ 0.62
Scn2aA0A0J9YTW6 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn2aA0A0J9YTW6 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Scn2aA0A0J9YTW6 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn2aA0A0J9YTW6 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.91■□□□□ 0.62
Scn2aA0A0J9YTW6 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn2aA0A0J9YTW6 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.91■□□□□ 0.62
Scn2aA0A0J9YTW6 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Scn2aA0A0J9YTW6 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.91■□□□□ 0.62
Scn2aA0A0J9YTW6 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms