Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Sh3rf1Q69ZI1 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
Sh3rf1Q69ZI1 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Gm14117-201ENSMUST00000122417 843 ntBASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sh3rf1Q69ZI1 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Sh3rf1Q69ZI1 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sh3rf1Q69ZI1 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Sh3rf1Q69ZI1 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Sh3rf1Q69ZI1 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.94■□□□□ 0.94
Sh3rf1Q69ZI1 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sh3rf1Q69ZI1 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf1Q69ZI1 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf1Q69ZI1 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf1Q69ZI1 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf1Q69ZI1 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sh3rf1Q69ZI1 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Sh3rf1Q69ZI1 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sh3rf1Q69ZI1 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Gm45102-201ENSMUST00000207427 857 ntBASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Iqck-206ENSMUST00000208658 2891 ntBASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sh3rf1Q69ZI1 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Sh3rf1Q69ZI1 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Sh3rf1Q69ZI1 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Sh3rf1Q69ZI1 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf1Q69ZI1 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf1Q69ZI1 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.89■□□□□ 0.93
Sh3rf1Q69ZI1 Gm9959-201ENSMUST00000068277 390 ntBASIC20.89■□□□□ 0.93
Sh3rf1Q69ZI1 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf1Q69ZI1 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf1Q69ZI1 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Sh3rf1Q69ZI1 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Sh3rf1Q69ZI1 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf1Q69ZI1 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.87■□□□□ 0.93
Sh3rf1Q69ZI1 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf1Q69ZI1 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.87■□□□□ 0.93
Sh3rf1Q69ZI1 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.87■□□□□ 0.93
Sh3rf1Q69ZI1 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf1Q69ZI1 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sh3rf1Q69ZI1 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.86■□□□□ 0.93
Sh3rf1Q69ZI1 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.85■□□□□ 0.93
Sh3rf1Q69ZI1 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms