Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Ube4aE9Q735 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ube4aE9Q735 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ube4aE9Q735 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ube4aE9Q735 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
Ube4aE9Q735 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Ube4aE9Q735 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
Ube4aE9Q735 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
Ube4aE9Q735 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC25.27■■□□□ 1.64
Ube4aE9Q735 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Ube4aE9Q735 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
Ube4aE9Q735 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ube4aE9Q735 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Ube4aE9Q735 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ube4aE9Q735 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ube4aE9Q735 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC25.26■■□□□ 1.63
Ube4aE9Q735 AC153962.1-201ENSMUST00000218530 1948 ntBASIC25.26■■□□□ 1.63
Ube4aE9Q735 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
Ube4aE9Q735 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Ube4aE9Q735 Gm43137-201ENSMUST00000198052 594 ntBASIC25.26■■□□□ 1.63
Ube4aE9Q735 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Ube4aE9Q735 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC25.25■■□□□ 1.63
Ube4aE9Q735 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
Ube4aE9Q735 Gm6139-201ENSMUST00000079261 882 ntBASIC25.25■■□□□ 1.63
Ube4aE9Q735 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
Ube4aE9Q735 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Ube4aE9Q735 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ube4aE9Q735 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Ube4aE9Q735 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ube4aE9Q735 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Ube4aE9Q735 Gm8770-201ENSMUST00000121113 1109 ntBASIC25.23■■□□□ 1.63
Ube4aE9Q735 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
Ube4aE9Q735 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC25.23■■□□□ 1.63
Ube4aE9Q735 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ube4aE9Q735 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Ube4aE9Q735 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ube4aE9Q735 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ube4aE9Q735 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC25.22■■□□□ 1.63
Ube4aE9Q735 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ube4aE9Q735 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ube4aE9Q735 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ube4aE9Q735 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ube4aE9Q735 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ube4aE9Q735 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ube4aE9Q735 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
Ube4aE9Q735 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Ube4aE9Q735 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC25.2■■□□□ 1.62
Ube4aE9Q735 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ube4aE9Q735 Gm42418-201ENSMUST00000182010 1831 ntBASIC25.19■■□□□ 1.62
Ube4aE9Q735 AC164883.3-201ENSMUST00000227396 1774 ntBASIC25.19■■□□□ 1.62
Ube4aE9Q735 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Ube4aE9Q735 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
Ube4aE9Q735 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Ube4aE9Q735 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC25.17■■□□□ 1.62
Ube4aE9Q735 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ube4aE9Q735 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ube4aE9Q735 Mir7075-201ENSMUST00000184187 82 ntBASIC25.17■■□□□ 1.62
Ube4aE9Q735 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Ube4aE9Q735 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC25.17■■□□□ 1.62
Ube4aE9Q735 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ube4aE9Q735 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ube4aE9Q735 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ube4aE9Q735 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ube4aE9Q735 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ube4aE9Q735 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
Ube4aE9Q735 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Gm43759-201ENSMUST00000196925 1261 ntBASIC25.15■■□□□ 1.62
Ube4aE9Q735 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ube4aE9Q735 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ube4aE9Q735 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ube4aE9Q735 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ube4aE9Q735 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ube4aE9Q735 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
Ube4aE9Q735 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ube4aE9Q735 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC25.13■■□□□ 1.61
Ube4aE9Q735 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ube4aE9Q735 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
Ube4aE9Q735 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ube4aE9Q735 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ube4aE9Q735 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms