Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Prpf40aQ9R1C7 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC22.95■■□□□ 1.26
Prpf40aQ9R1C7 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Prpf40aQ9R1C7 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
Prpf40aQ9R1C7 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Prpf40aQ9R1C7 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Prpf40aQ9R1C7 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Prpf40aQ9R1C7 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Prpf40aQ9R1C7 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
Prpf40aQ9R1C7 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Gm11847-201ENSMUST00000125165 1119 ntBASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Prpf40aQ9R1C7 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Prpf40aQ9R1C7 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
Prpf40aQ9R1C7 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Prpf40aQ9R1C7 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Prpf40aQ9R1C7 Gm16464-201ENSMUST00000117815 1095 ntBASIC22.92■■□□□ 1.26
Prpf40aQ9R1C7 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Prpf40aQ9R1C7 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Prpf40aQ9R1C7 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Prpf40aQ9R1C7 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC22.91■■□□□ 1.26
Prpf40aQ9R1C7 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
Prpf40aQ9R1C7 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Prpf40aQ9R1C7 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Prpf40aQ9R1C7 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC22.89■■□□□ 1.26
Prpf40aQ9R1C7 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
Prpf40aQ9R1C7 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
Prpf40aQ9R1C7 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Prpf40aQ9R1C7 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Prpf40aQ9R1C7 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
Prpf40aQ9R1C7 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
Prpf40aQ9R1C7 Gm5812-201ENSMUST00000061073 957 ntBASIC22.89■■□□□ 1.25
Prpf40aQ9R1C7 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Prpf40aQ9R1C7 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Prpf40aQ9R1C7 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
Prpf40aQ9R1C7 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Prpf40aQ9R1C7 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Gm12504-201ENSMUST00000120860 2231 ntBASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Prpf40aQ9R1C7 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Prpf40aQ9R1C7 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Prpf40aQ9R1C7 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
Prpf40aQ9R1C7 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Prpf40aQ9R1C7 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Prpf40aQ9R1C7 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Prpf40aQ9R1C7 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Prpf40aQ9R1C7 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Prpf40aQ9R1C7 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Prpf40aQ9R1C7 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC22.86■■□□□ 1.25
Prpf40aQ9R1C7 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Prpf40aQ9R1C7 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC22.85■■□□□ 1.25
Prpf40aQ9R1C7 AC116713.1-201ENSMUST00000215074 430 ntBASIC22.85■■□□□ 1.25
Prpf40aQ9R1C7 Gm10232-201ENSMUST00000089221 720 ntBASIC22.85■■□□□ 1.25
Prpf40aQ9R1C7 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
Prpf40aQ9R1C7 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
Prpf40aQ9R1C7 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Prpf40aQ9R1C7 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Prpf40aQ9R1C7 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
Prpf40aQ9R1C7 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Prpf40aQ9R1C7 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Prpf40aQ9R1C7 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Prpf40aQ9R1C7 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Prpf40aQ9R1C7 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Prpf40aQ9R1C7 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
Prpf40aQ9R1C7 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
Prpf40aQ9R1C7 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Prpf40aQ9R1C7 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Prpf40aQ9R1C7 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Prpf40aQ9R1C7 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.24
Prpf40aQ9R1C7 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Prpf40aQ9R1C7 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Prpf40aQ9R1C7 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC22.82■■□□□ 1.24
Prpf40aQ9R1C7 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 88.4 ms